diff --git a/slides/cours_21.md b/slides/cours_21.md new file mode 100644 index 0000000000000000000000000000000000000000..eaab8379e4851515124fcebc90aa11e6c12c9f8d --- /dev/null +++ b/slides/cours_21.md @@ -0,0 +1,1040 @@ +--- +title: "Barnes-Hut et B-arbres" +date: "2023-05-12" +--- + +# Le cours précédent + +## A quoi sert l'algorithme de Barnes-Hut? + +. . . + +* A accélérer la résolution du problème à $n$-corps avec la gravitation, +* si on peut vivre avec une réduction de précision. + +## Sur quelle structure de données se base l'algorithme? + +* L'arbre quaternaire. + +. . . + +## Quelle est l'idée générale? + +. . . + +* Si un groupe d'étoiles est suffisamment loin, on le modélise comme un corps unique situé en son centre de masse. +* Exemple: Si on simule plusieurs galaxies, on considère chaque galaxie comme un corps unique! +* Un arbre quaternaire est une structure parfaite pour regrouper les étoiles. + + +# Le cas à 10 corps + +::: columns + +:::: {.column width=50%} + +## Illustration: le cas à 10 corps + +{width=60%} + +:::: + +:::: {.column width=50%} + +## Problématique + +* On veut calculer la force sur $1$. + +:::: + +::: + +. . . + + +::: columns + +:::: {.column width=50%} + +## Illustration: le cas à 10 corps + +{width=60%} + + +:::: + +:::: {.column width=50%} + +## Résultat + +* Calcul et somme des forces venant des $9$ autre corps. + +:::: + +::: + +# Le cas à 10 corps + +::: columns + +:::: {.column width=50%} + +## Réduction d'un groupe à un seul corps + +{width=100%} + +:::: + +:::: {.column width=50%} + +## Idée + +* On accélère le calcul en traitant un groupe comme un seul corps. +* Fonctionne uniquement si le groupe est assez loin. +* Autrement l'approximation est trop grossière. + +:::: + +::: + +# Solution: l'arbre quaternaire + +## Corps célestes - arbre + + + +* On omet les nœuds vides pour éviter la surcharge. +* La numérotation est: + * 0: ID + * 1: SD + * 2: IG + * 3: SG + +# Exemple d'insertion + +::: columns + +:::: {.column width=50%} + +## Insertion corps 1 + +{width=100%} + +:::: + +:::: {.column width=50%} + +## Arbre, niveau 1 + +{width=100%} + +* Quadrant ID. +* La feuille est vide, on insère. + +:::: + +::: + +# Exemple d'insertion + +::: columns + +:::: {.column width=50%} + +## Insertion corps 2 + +{width=100%} + +:::: + +:::: {.column width=50%} + +## Arbre, niveau 1 + +{width=100%} + +* Quadrant SD. +* La feuille est vide, on insère. + +:::: + +::: + +# Exemple d'insertion + +::: columns + +:::: {.column width=50%} + +## Insertion corps 3 (1/N) + +{width=100%} + +:::: + +:::: {.column width=50%} + +## Arbre, niveau 1 + +{width=100%} + +* Quadrant SD. +* La feuille est prise par 2. + +:::: + +::: + +# Exemple d'insertion + +::: columns + +:::: {.column width=50%} + +## Insertion corps 3 (2/N) + +{width=100%} + +:::: + +:::: {.column width=50%} + +## Arbre, niveau 2 + +{width=100%} + +* On crée un nouveau nœud. +* Deux corps dans le nœud ID. +* On crée un nouveau nœud. + +:::: + +::: + +# Exemple d'insertion + +::: columns + +:::: {.column width=50%} + +## Insertion corps 3 (3/N) + +{width=100%} + +:::: + +:::: {.column width=50%} + +## Arbre, niveau 3 + +{width=100%} + +* 2 va dans ID. +* 3 va dans SG. +* C'est des feuilles vides, tout va bien. + +:::: + +::: + +# Exemple d'insertion + +::: columns + +:::: {.column width=50%} + +## Que fait-on avec les nœuds intérieurs? + +* On les utilise pour: + * stocker la masse totale; + * stocker le centre de masse. + +\begin{align} +m&=m_2+m_3,\\ +\vec x &= \frac{m_2\vec x_2+m_3\vec x_3}{m}. +\end{align} + +## Chaque feuille contient **une étoile** + +:::: + +:::: {.column width=50%} + +## Arbre + +{width=100%} + +:::: + +::: + +# Résumé + +* Insertion du corps `c` dans le nœud `n` en partant de la racine. +* Si le nœud `n` + * ne contient pas de corps, on y dépose `c`, + * est interne, on met à jour masse et centre de masse. `c` est inséré récursivement dans le bon quadrant. + * est externe, on subdivise `n`, on met à jour la masse et centre de masse, on insère récursivement les deux nœuds dans les quadrants appropriés. + +## Remarque + +* Il faut stocker les coordonnées des quadrants. +* Un nœud a un comportement différent s'il est interne ou externe. + +# Algorithme d'insertion + +## Structure de données + +```C +struct node + etoile e // externe: pour stocker + etoile sup_etoile // interne: pour stocker m, x + quadrant q // coordonnées du quadrant + node enfants[4] +``` + +## Remarque: + +* On fait une simplification "moche": `sup_etoile` pourrait juste avoir une masse et une position. + +# Algorithme d'insertion + +\footnotesize + +## Algorithme d'insertion, pseudo-code (15min, matrix) + +. . . + +```C +rien insertion_etoile(arbre, e) + si (!est_vide(arbre) && dans_le_quadrant(arbre.q, e.x)) { + si (est_feuille(arbre)) + si (!contient_etoile(arbre)) + arbre.e = e + sinon + // on crée enfants et arbre.sup_etoile est initialisée + subdivision_arbre(arbre, e) + pour enfant dans arbre.enfants + insertion_etoile(enfant, arbre.e) + pour enfant dans arbre.enfants + insertion_etoile(enfant, e) + destruction(arbre.e) + sinon + maj_masse_cdm(arbre.sup_etoile, e) + pour enfant dans arbre.enfants + insertion_etoile(enfant, e) +``` + +# Utilisation de l'arbre + +* L'arbre est rempli: comment on calcule la force sur le corps 1? +* Parcours de l'arbre: + * si la distance entre 1 et le centre de masse est suffisante, on utilise la masse totale et centre de masse pour calculer la force. + * sinon, on continue le parcours + +# Calcul de la force + +## Calcul de la force sur `1` + + + +* Le cadrant ID ne contient que `1`, rien à faire. + +# Calcul de la force + +## Calcul de la force sur `1` + + + +* Le cadrant SG ne contient `5` corps. + +# Calcul de la force + +## Calcul de la force sur `1` + + + +* La distance entre `1` et le centre de masse de SG est `d`. + +# Calcul de la force + +## Calcul de la force sur `1` + + + +* La distance entre `1` et le centre de masse de SG est `d`. +* Est-ce que `d` est assez grand? +* On va comparer avec la distance `d` avec la taille du quadrant `s`. + +# Critère $\theta$ + +* On compare $d=||\vec x_1-\vec x_{cm}||$ avec $s$ la taille du quadrant. +* Le domain est assez éloigné si + + $$ + \frac{s}{d}<\theta, + $$ +* $\theta$ est la valeur de seuil. +* Une valeur typique est $\theta=0.5$, donc la condition devient + + $$ + d>2s. + $$ + +# Calcul de la force + +## Calcul de la force sur `1` + + + +* Ici $d<2s$, domaine rejeté. +* ON descend dans l'arbre. + +# Calcul de la force + +## Calcul de la force sur `1` + + + +* `s` est plus petit, mais.... +* Cela ne suffit pas $d<2s$, domaine rejeté. + +# Calcul de la force + +## Calcul de la force sur `1` + + + +* Les nœuds sont des feuilles, on calcule la force. +* On ajoute la force qu'ils exercent sur `1`. + +# Algorithme pour le calcul de la force + +Pour calculer la force sur un corps `c`, on parcourt l'arbre en commençant par la racine: + +* Si le nœud `n` est une feuille et n'est pas `c`, on ajoute la force dûe à `n` sur `c`; +* Sinon si $s/d<\theta$, on traite `n` comme une feuille et on ajoute la force dûe à `n` sur `c`; +* Sinon on continue sur les enfants récursivement. + + +## Cotinuous notre exemple précédent! + +# Calcul de la force + +## Calcul de la force sur `1` + + + +* Il y a deux corps dans le quadrant vert. +* Quel est le critère pour remplacer les étoiles par leur centre de masse? + +. . . + +* Et oui! $d>2s$ on peut remplacer les étoiles par leur centre de masse! + +# Algorithme du calcul de force + +## Écrire le psuedo-code du calcul de la force + +\footnotesize + +```C +rien maj_force_sur_etoile(arbre, e, theta) + si est_vide(arbre) + retourne + + si est_feuille(arbre) && contient_etoile(arbre) && dans_le_quadrant(arbre.q, e.x) + maj_force(e, arbre.e) + sinon si noeud_assez_loin(arbre, e, theta) + maj_force(e, arbre.sup_etoile) + sinon + pour enfant dans enfants + maj_force_sur_etoile(enfant, e, theta) +``` + +# Les B-arbres + +## Problématique + +* Grands jeux de données (en 1970). +* Stockage dans un arbre, mais l'arbre tiens pas en mémoire. +* Regrouper les sous-arbres en **pages** qui tiennent en mémoire. + +## Exemple + +* 100 noeuds par page et l'arbre comporte $10^6$ noeuds: + * Recherche B-arbre: $\log_{100}(10^6)=3$; + * Recherche ABR: $\log_2(10^6)=20$. +* Si on doit lire depuis le disque: $10\mathrm{ms}$ par recherche+lecture: + * $30\mathrm{ms}$ (lecture beaucoup plus rapide que recherche) vs $200\mathrm{ms}=0.2\mathrm{s}$. + +## Remarques + +* On sait pas ce que veut dire `B`: Bayer, Boeing, Balanced? +* Variante plus récente B+-arbres. + +# Les B-arbres + +## Illustration, arbre divisé en pages de 3 noeuds + + + +. . . + +## Utilisation + +* Bases de données (souvent très grandes donc sur le disque); +* Système de fichier. + +# Les B-arbres + +## Avantages + +* Arbres moins profonds; +* Diminue les opération de rééquilibrage; +* Complexité toujours en $\log(N)$; + +. . . + +## Définition: B-arbre d'ordre $n$ + +* Chaque page d'un arbre contient au plus $2\cdot n$ *clés*; +* Chaque page (excepté la racine) contient au moins $n$ clés; +* Chaque page qui contient $m$ clés contient soit: + * $0$ descendants; + * $m+1$ descendants. +* Toutes les pages terminales apparaissent au même niveau. + +# Les B-arbres + +## Est-ce un B-arbre? + + + +. . . + +## Oui! + +* Dans chaque noeud les clés sont **triées**. +* Chaque page contient au plus $n$ noeuds: check; +* Chaque noeud avec $m$ clés a $m+1$ descendants; +* Toutes les feuilles apparaissent au même niveau. + +# Les B-arbres + +## Exemple de recherche: trouver `32` + + + +. . . + +* Si `n` plus petit que la 1e clé ou plus grand que la dernière descendre. +* Sinon parcourir (par bissection ou séquentiellement) jusqu'à trouver ou descendre entre 2 éléments. + +# Les B-arbres + +## La recherche de la clé `C` algorithme + +0. En partant de la racine. +1. Si on est dans une feuille: + * Si la `C` est dans une page, retourner la page; + * Sinon c'est perdu. +2. Sinon: + * Tant que `C > page` passer à la page suivante + * Descendre + +# Les B-arbres + +## Disclaimer + +* Inspiration de <https://en.wikipedia.org/wiki/B-tree> + +## Exemples d'insertion: `1` + + + +. . . + +* L'arbre est vide, on insère juste dans la première page. + +# Les B-arbres + +## Exemples d'insertion: `2` + + + +. . . + +* La première page est pas pleine, on insère dans l'ordre (après 1). + +# Les B-arbres + +## Exemples d'insertion: `3` + +{width=50%} + +* Comment on insère (1min de réflexion avant de donner une réponse!)? + +# Les B-arbres + +## Exemples d'insertion: `3` + +{width=50%} + +. . . + +* La page est pleine, on crée deux enfants. +* On choisit, `2`, la médiane de `1, 2, 3` et il est inséré à la racine. +* `1` descend à gauche, `3` descend à droite. + +# Les B-arbres + +## Exemples d'insertion: `4` + +{width=50%} + +* Comment on insère (1min de réflexion avant de donner une réponse!)? + +# Les B-arbres + +## Exemples d'insertion: `4` + +{width=50%} + +. . . + +* On pourrait insérer à droite de `2`, mais... ça ferait 2 parents pour 2 enfants (mais `m` parents => `m+1` enfants ou `0`); +* On descend à droite (`4 > 2`); +* On insère à droite de `3`. + +# Les B-arbres + +## Exemples d'insertion: `5` + +{width=50%} + +* Comment on insère (1min de réflexion avant de donner une réponse!)? + +# Les B-arbres + +## Exemples d'insertion: `5` + + + +. . . + +* On descend à droite (on peut pas insérer à la racine comme pour `4`); +* On dépasse la capacité de l'enfant droite; +* `4`, médiane de `3, 4, 5`, remonte à la racine; +* On crée un nouveau noeud à droite de `4`; +* La règle `m => m+1` est ok. + +# Les B-arbres + +## Exemples d'insertion: `6` + +{width=50%} + +* Comment on insère (1min de réflexion avant de donner une réponse!)? + +# Les B-arbres + +## Exemples d'insertion: `6` + + + +. . . + +* `6 > 4` on descend à droite; +* `6 > 5` et on a à la place à droite, on insère. + +# Les B-arbres + +## Exemples d'insertion: `7` + +{width=50%} + +* Comment on insère (1min de réflexion avant de donner une réponse!)? + +# Les B-arbres + +## Exemples d'insertion: `7` + +{width=50%} + +. . . + +* `7 > 4` on descend à droite; +* `7 > 6` mais on a dépassé la capacité; +* `6` est la médiane de `5, 6, 7`, remonte à la racine; +* `5` reste à gauche, `7` à droite, mais `6` fait dépasser la capacité de la racine; +* `4` est la médiane de `2, 4, 6`, `4` remonte, `2` reste à gauche, `6` à droite. + +# Les B-arbres + +## L'algorithme d'insertion + +0. Rechercher la feuille (la page a aucun enfant) où insérer; +1. Si la page n'est pas pleine insérer dans l'ordre croissant. +2. Si la page est pleine, on sépare la page en son milieu : + 1. On trouve la médiane, `M`, de la page; + 2. On met les éléments `< M` dans la page de gauche de `M` et les `> M` dans la page de droite de `M`; + 3. `M` est insérée récursivement dans la page parent. + +# Les B-arbres + +## Exercice: insérer `22, 45, 50` dans l'arbre d'ordre 2 (3min matrix) + + + +. . . + + + + +# Les B-arbres + +## Exercice: insérer `5` dans l'arbre d'ordre 2 (3min matrix) + + + +. . . + + + +# Les B-arbres + +## Exercice: insérer `32, 55, 60` dans l'arbre d'ordre 2 (3min matrix) + + + +. . . + + + +# Les B-arbres + +## Exercice: insérer `41` dans l'arbre d'ordre 2 (3min matrix) + + + +. . . + + + +# Les B-arbres + +## Exercice (matrix, 15min) + +* Insérer 20, 40, 10, 30, 15, 35, 7, 26, 18, 22, 5, 42, 13, 46, 27, 8, 32, 38, 24, 45, 25, 2, 14, 28, 32, 41, +* Dans un B-arbre d'ordre 2. + +# Les B-arbres + +## Structure de données + +* Chaque page a une contrainte de remplissage, par rapport à l'ordre de l'arbre; +* Un noeud (page) est composé d'un tableau de clés/pointeurs vers les enfants; + +``` +P_0 | K_1 | P_1 | K_2 | | P_i | K_{i+1} | | P_{m-1} | K_m | P_m +``` + +* `P_0`, ..., `P_m` pointeurs vers enfants; +* `K_1`, ..., `K_m` les clés. +* Il y a `m+1` pointeurs mais `m` clés. +* Comment faire pour gérer l'insertion? + +# Les B-arbres + +## Faire un dessin de la structure de données (3min matrix)? + +. . . + + + +1. On veut un tableau de `P_i, K_i => struct`; +2. `K_0` va être en "trop"; +3. Pour simplifier l'insertion dans une page, on ajoute un élément de plus. + +# Les B-arbres + +## L'insertion cas noeud pas plein, insertion `4`? + +{width=50%} + +. . . + +## Solution + +{width=50%} + +# Les B-arbres + +## L'insertion cas noeud pas plein, insertion `N` + +* On décale les éléments plus grand que `N`; +* On insère `N` dans la place "vide"; +* Si la page n'est pas pleine, on a terminé. + +# Les B-arbres + +## L'insertion cas noeud plein, insertion `2`? + +{width=50%} + +. . . + +## Solution + +{width=50%} + +# Les B-arbres + +## L'insertion cas noeud plein, promotion `3`? + +{width=50%} + +. . . + +## Solution + + + +# Les B-arbres + +## L'insertion cas noeud plein, insertion `N` + +* On décale les éléments plus grand que `N`; +* On insère `N` dans la place "vide"; +* Si la page est pleine: + * On trouve la valent médiance `M` de la page (quel indice?); + * On crée une nouvelle page de droite; + * On copie les valeur à droite de `M` dans la nouvelle page; + * On promeut `M` dans la page du dessus; + * On connecte le pointeur de gauche de `M` et de droite de `M` avec l'ancienne et la nouvelle page respectivement. + +# Les B-arbres + +## Pseudo-code structure de données (3min, matrix)? + +. . . + +```C +struct page + entier ordre, nb + element tab[2*ordre + 2] +``` + +```C +struct element + int clé + page pg +``` + +# Les B-arbres + +\footnotesize + +## Les fonctions utilitaires (5min matrix) + +```C +booléen est_feuille(page) // la page est elle une feuille? +entier position(page, valeur) // à quelle indice on insère? +booléen est_dans_page(page, valeur) // la valeur est dans la page +``` + +. . . + +```C +booléen est_feuille(page) + retourne (page.tab[0].pg == vide) + +entier position(page, valeur) + i = 0 + tant que i < page.nb && val >= page.tab[i+1].clef + i += 1 + retourne i + +booléen est_dans_page(page, valeur) + i = position(page, valeur) + retourne (page.nb > 0 && page.tab[i].val == valeur) +``` + +# Les B-arbres + +\footnotesize + +## Les fonctions utilitaires (5min matrix) + +```C +page nouvelle_page(ordre) // creer une page +rien liberer_memoire(page) // liberer tout un arbre! +``` +. . . + +```C +page nouvelle_page(ordre) + page = allouer(page) + page.ordre = ordre + page.nb = 0 + page.tab = allouer(2*ordre+2) + retourner page + +rien liberer_memoire(page) + si est_feuille(page) + liberer(page.tab) + liberer(page) + sinon + pour fille dans page.tab + liberer_memoire(fille) + liberer(page.tab) + liberer(page) +``` + +# Les B-arbres + +## Les fonctions (5min matrix) + +```C +page recherche(page, valeur) // retourner la page contenant + // la valeur ou vide +``` + +. . . + +```C +page recherche(page, valeur) + si est_dans_page(page, valeur) + retourne page + sinon si est_feuille(page) + retourne vide + sinon + recherche(page.tab[position(page, valeur)], valeur) +``` + +# Les B-arbres + +## Les fonctions + +```C +page inserer_valeur(page, valeur) // inserer une valeur +``` + +. . . + +```C +page inserer_valeur(page, valeur) + element = nouvel_element(valeur) + // on change element pour savoir s'il faut le remonter + inserer_element(page, element) + si element.page != vide && page.nb > 2*page.ordre + // si on atteint le sommet! + page = ajouter_niveau(page, element) + retourne page +``` + +# Les B-arbres + +## Les fonctions + +```C +rien inserer_element(page, element) // inserer un element et voir s'il remonte +``` + +. . . + +```C +rien inserer_element(page, element) + si est_feuille(page) + placer(page, element) + sinon + sous_page = page.tab[position(page, element)].page + inserer_element(sous_page, element) + // un element a été promu + si element.page != vide + placer(page, element) +``` + +# Les B-arbres + +## Les fonctions (5min matrix) + +```C +rien placer(page, element) // inserer un élément +``` + +. . . + +```C +rien placer(page, element) + pos = position(page, element.clé) + pour i de 2*page.ordre à pos+1 + page.tab[i+1] = page.tab[i] + page.tab[pos+1] = element + page.nb += 1 + si page.nb > 2*page.ordre + scinder(page, element) +``` + +# Les B-arbres + +## Les fonctions (5min matrix) + +```C +rien scinder(page, element) // casser une page et remonter +``` + +. . . + +```C +rien scinder(page, element) + new_page = new_page(page.ordre) + new_page.nb = page.ordre + pour i de 0 à ordre inclu + new_page.tab[i] = page.tab[i+ordre+1] + element.clé = page.tab[ordre+1].clé + element.page = new_page +``` + +# Les B-arbres + +## Les fonctions (5min matrix) + +```C +page ajouter_niveau(page, element) // si on remonte à la racine... + // on doit créer une nouvelle racine +``` + +. . . + +```C +page ajouter_niveau(page, element) + tmp = nouvelle_page(page.ordre) + tmp.tab[0].page = page + tmp.tab[1].clé = element.clé + tmp.tab[1].page = element.page + retourne tmp +``` + + +<!-- # Les B-arbres --> + +<!-- ## Structure de données en C (3min, matrix) --> + +<!-- . . . --> + +<!-- ```C --> +<!-- typedef struct _page { --> +<!-- int order, nb; --> +<!-- struct _element *tab; --> 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