diff --git a/ProcessFASTQ.ipynb b/ProcessFASTQ.ipynb index 30eaeb3533bf642832c9e81a0049736221833c91..3c1f9058796c0629231f3e632cbe42ab7aae949e 100644 --- a/ProcessFASTQ.ipynb +++ b/ProcessFASTQ.ipynb @@ -358,7 +358,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 170, "metadata": { "collapsed": false }, @@ -370,11 +370,21 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 171, "metadata": { "collapsed": false }, - "outputs": [], + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "This is cutadapt 1.9.1 with Python 3.5.1\n", + "Command line parameters: -a CTGTAGGCACCATCAATAGATCGGAA -o 1-Cutadapted/flowcell384_lane7_pair1_TGACCA.fastq.gz --quiet flowcell384_lane7_pair1_TGACCA.fastq.gz\n", + "Trimming 1 adapter with at most 10.0% errors in single-end mode ...\n" + ] + } + ], "source": [ "%%bash\n", "source ./source\n", @@ -392,11 +402,19 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 172, "metadata": { "collapsed": false }, - "outputs": [], + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Cutadapt run time : 0:38:47.798753\n" + ] + } + ], "source": [ "# Store current time\n", "after = datetime.datetime.now()\n", @@ -409,7 +427,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 173, "metadata": { "collapsed": true },