From 0c1a838bc333a4ae704b212c76dc1c4ac9d2fe35 Mon Sep 17 00:00:00 2001
From: Julien Cornut <julien.cornut@hesge.ch>
Date: Thu, 25 Feb 2016 17:08:01 +0100
Subject: [PATCH] Automatic Update
---
ProcessFASTQ.ipynb | 30 ++++++++++++++++++++++++------
1 file changed, 24 insertions(+), 6 deletions(-)
diff --git a/ProcessFASTQ.ipynb b/ProcessFASTQ.ipynb
index 30eaeb3..3c1f905 100644
--- a/ProcessFASTQ.ipynb
+++ b/ProcessFASTQ.ipynb
@@ -358,7 +358,7 @@
},
{
"cell_type": "code",
- "execution_count": null,
+ "execution_count": 170,
"metadata": {
"collapsed": false
},
@@ -370,11 +370,21 @@
},
{
"cell_type": "code",
- "execution_count": null,
+ "execution_count": 171,
"metadata": {
"collapsed": false
},
- "outputs": [],
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "This is cutadapt 1.9.1 with Python 3.5.1\n",
+ "Command line parameters: -a CTGTAGGCACCATCAATAGATCGGAA -o 1-Cutadapted/flowcell384_lane7_pair1_TGACCA.fastq.gz --quiet flowcell384_lane7_pair1_TGACCA.fastq.gz\n",
+ "Trimming 1 adapter with at most 10.0% errors in single-end mode ...\n"
+ ]
+ }
+ ],
"source": [
"%%bash\n",
"source ./source\n",
@@ -392,11 +402,19 @@
},
{
"cell_type": "code",
- "execution_count": null,
+ "execution_count": 172,
"metadata": {
"collapsed": false
},
- "outputs": [],
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "Cutadapt run time : 0:38:47.798753\n"
+ ]
+ }
+ ],
"source": [
"# Store current time\n",
"after = datetime.datetime.now()\n",
@@ -409,7 +427,7 @@
},
{
"cell_type": "code",
- "execution_count": null,
+ "execution_count": 173,
"metadata": {
"collapsed": true
},
--
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