From 4473d491d624b8adfa9ed4faa5c5fbe91ad6cdf6 Mon Sep 17 00:00:00 2001
From: Julien Cornut <julien.cornut@hesge.ch>
Date: Fri, 26 Feb 2016 12:18:01 +0100
Subject: [PATCH] Automatic Update
---
ProcessFASTQ.ipynb | 6 ++++--
1 file changed, 4 insertions(+), 2 deletions(-)
diff --git a/ProcessFASTQ.ipynb b/ProcessFASTQ.ipynb
index f9ac944..75b174b 100644
--- a/ProcessFASTQ.ipynb
+++ b/ProcessFASTQ.ipynb
@@ -683,7 +683,7 @@
},
{
"cell_type": "code",
- "execution_count": 254,
+ "execution_count": 255,
"metadata": {
"collapsed": false
},
@@ -2722,12 +2722,14 @@
" #sub_iter = (rec for rec in filt_iter \\\n",
" # if matches.readline().split('\\t')[1] == '4')\n",
" \n",
+ " seqiter = []\n",
+ " \n",
" for record in filt_iter:\n",
" arr = matches.readline().split('\\t')\n",
" seq_id = arr[0]\n",
" flag = arr[1]\n",
" if(flag=='4'):\n",
- " \n",
+ " seqiter.append(record)\n",
" \n",
" print(\"{0}\\n{1}:\\t{2}\".format(seq_id,record.id,flag,))\n",
" \n",
--
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