From 502abb8ecb6a9ab7ae26b82a8028998605883a75 Mon Sep 17 00:00:00 2001
From: Julien Cornut <julien.cornut@hesge.ch>
Date: Thu, 25 Feb 2016 08:17:01 +0100
Subject: [PATCH] Automatic Update

---
 ProcessFASTQ.ipynb | 47 +++++++++++++++++++++++++++++++++++++++-------
 1 file changed, 40 insertions(+), 7 deletions(-)

diff --git a/ProcessFASTQ.ipynb b/ProcessFASTQ.ipynb
index a9e3ecb..2537028 100644
--- a/ProcessFASTQ.ipynb
+++ b/ProcessFASTQ.ipynb
@@ -208,7 +208,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": null,
+   "execution_count": 91,
    "metadata": {
     "collapsed": false
    },
@@ -231,11 +231,22 @@
   },
   {
    "cell_type": "code",
-   "execution_count": null,
+   "execution_count": 92,
    "metadata": {
     "collapsed": false
    },
-   "outputs": [],
+   "outputs": [
+    {
+     "data": {
+      "text/plain": [
+       "'flowcell384_lane7_pair1_ACTTGA.fastq.gz'"
+      ]
+     },
+     "execution_count": 92,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
    "source": [
     "# Copy file from 0-Raws to root dir of notebook to work safer\n",
     "copyfile(\"0-Raws/\"+fname+\".fastq.gz\", fname+\".fastq.gz\")"
@@ -255,11 +266,25 @@
   },
   {
    "cell_type": "code",
-   "execution_count": null,
+   "execution_count": 93,
    "metadata": {
     "collapsed": false
    },
-   "outputs": [],
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "\n",
+      "flowcell384_lane7_pair1_ACTTGA\n",
+      "\n",
+      "@SN279:498:C88PKACXX:7:1109:1643:2231 1:N:0:ACTTGA\n",
+      "NGAGGTGCACAATCGACCGATCCTGCTGTAGGCACCATCAATAGATCGGAA\n",
+      "+\n",
+      "#1:==BDDFDFFFEAFG:FG?0?BBD<?GBF3??F(??C)8=F<FF;=;;;\n"
+     ]
+    }
+   ],
    "source": [
     "%%bash\n",
     "source ./source\n",
@@ -278,11 +303,19 @@
   },
   {
    "cell_type": "code",
-   "execution_count": null,
+   "execution_count": 94,
    "metadata": {
     "collapsed": false
    },
-   "outputs": [],
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Processing will take approximatively 0 hour(s) 30 minute(s) and 25 second(s)\n"
+     ]
+    }
+   ],
    "source": [
     "# Get file size in bytes\n",
     "fsize = path.getsize(fname+\".fastq.gz\")\n",
-- 
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