diff --git a/ProcessFASTQ.ipynb b/ProcessFASTQ.ipynb
index 0ac866ad58a0bc8aaaeaa8c3984910dde79db73a..7fb7a8b39a791c5f06022bb2f3c8f883f826135c 100644
--- a/ProcessFASTQ.ipynb
+++ b/ProcessFASTQ.ipynb
@@ -671,54 +671,6 @@
     "    "
    ]
   },
-  {
-   "cell_type": "code",
-   "execution_count": 279,
-   "metadata": {
-    "collapsed": false
-   },
-   "outputs": [
-    {
-     "name": "stdout",
-     "output_type": "stream",
-     "text": [
-      "@PG\tID:Bowtie\tVN:1.1.2\tCL:\"bowtie --wrapper basic-0 -S -v 3 -p 8 --time --best ref/2-Indexes/Yeast-Noncoding/Yeast-Noncoding 3-Filtered/testing.fastq 4-Bowtied/testing.sam\"\n",
-      "SN279:493:C84L3ACXX:4:2309:1272:2215\t4\t*\t0\t0\t*\t*\t0\t0\tNGAGGACCGAACCGACTTACGTT\t#1=DDFFFGGHHHIIJIJIJJFH\tXM:i:0\n",
-      "SN279:493:C84L3ACXX:4:2309:1275:2239\t4\t*\t0\t0\t*\t*\t0\t0\tTCAGGTTACCCGCGACAGGACGGAA\tCC@DFDEDHHDFHEEFIIIIGIE:@\tXM:i:0\n",
-      "SN279:493:C84L3ACXX:4:2309:2182:2231\t4\t*\t0\t0\t*\t*\t0\t0\tAAGATCCCTCGAAGATGACGAGGT\tCCCFFD>DDCDDFH@AFHIJIGE?\tXM:i:0\n",
-      "SN279:493:C84L3ACXX:4:2309:1652:2216\t0\tRDN25-1\t2545\t255\t24M\t*\t0\t0\tNCACGTTCTAGCATTCAAGGTCCC\t#1=BDDDDFFDBBGHGEEIEHIII\tXA:i:1\tMD:Z:0C23\tNM:i:1\n",
-      "SN279:493:C84L3ACXX:4:2309:2260:2244\t0\tRDN58-1\t131\t255\t28M\t*\t0\t0\tAGGGGGCATGCCTGTTTGAGCGTCATTT\tCCCFFFFFHHHHHIGIJJIJJJJJJIJJ\tXA:i:0\tMD:Z:28\tNM:i:0\n",
-      "\n",
-      "\n",
-      "\n",
-      "\n",
-      "@SN279:493:C84L3ACXX:4:2309:1272:2215 1:N:0:CAGATC\n",
-      "NGAGGACCGAACCGACTTACGTT\n",
-      "+\n",
-      "#1=DDFFFGGHHHIIJIJIJJFH\n",
-      "@SN279:493:C84L3ACXX:4:2309:1309:2236 1:N:0:CAGATC\n",
-      "CTTTCTTTACTTATTCAATGAAGCGGA\n",
-      "+\n",
-      "CCCFFDFFHHHHHJJJJJJJJJJJJJJ\n",
-      "@SN279:493:C84L3ACXX:4:2309:1275:2239 1:N:0:CAGATC\n",
-      "TCAGGTTACCCGCGACAGGACGGAA\n"
-     ]
-    }
-   ],
-   "source": [
-    "%%bash \n",
-    "source ./source\n",
-    "\n",
-    "sed -n 415,420p 4-Bowtied/$FILENAME.sam\n",
-    "\n",
-    "echo\n",
-    "echo\n",
-    "echo\n",
-    "echo\n",
-    "\n",
-    "head 3-Filtered/$FILENAME.fastq"
-   ]
-  },
   {
    "cell_type": "code",
    "execution_count": 239,
@@ -734,7 +686,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 268,
+   "execution_count": 281,
    "metadata": {
     "collapsed": false
    },
@@ -791,7 +743,39 @@
       " '0',\n",
       " 'TCAGGTTACCCGCGACAGGACGGAA',\n",
       " 'CC@DFDEDHHDFHEEFIIIIGIE:@',\n",
-      " 'XM:i:0\\n']\n"
+      " 'XM:i:0\\n']\n",
+      "\n",
+      "PRINT : \n",
+      "\n",
+      "SN279:493:C84L3ACXX:4:2309:1275:2239\n",
+      "SN279:493:C84L3ACXX:4:2309:1309:2236:\t4\n",
+      "\n",
+      "\n",
+      "ID: SN279:493:C84L3ACXX:4:2309:1275:2239\n",
+      "Name: SN279:493:C84L3ACXX:4:2309:1275:2239\n",
+      "Description: SN279:493:C84L3ACXX:4:2309:1275:2239 1:N:0:CAGATC\n",
+      "Number of features: 0\n",
+      "Per letter annotation for: phred_quality\n",
+      "Seq('TCAGGTTACCCGCGACAGGACGGAA', SingleLetterAlphabet())\n",
+      "['SN279:493:C84L3ACXX:4:2309:2182:2231',\n",
+      " '4',\n",
+      " '*',\n",
+      " '0',\n",
+      " '0',\n",
+      " '*',\n",
+      " '*',\n",
+      " '0',\n",
+      " '0',\n",
+      " 'AAGATCCCTCGAAGATGACGAGGT',\n",
+      " 'CCCFFD>DDCDDFH@AFHIJIGE?',\n",
+      " 'XM:i:0\\n']\n",
+      "\n",
+      "PRINT : \n",
+      "\n",
+      "SN279:493:C84L3ACXX:4:2309:2182:2231\n",
+      "SN279:493:C84L3ACXX:4:2309:1275:2239:\t4\n",
+      "\n",
+      "\n"
      ]
     }
    ],
@@ -824,12 +808,13 @@
     "        arr = matches.readline().split('\\t')\n",
     "        pprint(arr)\n",
     "        i+=1\n",
-    "        if(i>3): break\n",
+    "        \n",
     "        seq_id = arr[0]\n",
     "        flag = arr[1]\n",
     "        if(flag=='4'):\n",
     "            print(\"\\nPRINT : \\n\\n{0}\\n{1}:\\t{2}\\n\\n\".format(seq_id,record.id,flag))\n",
     "            seqiter.append(record)\n",
+    "        if(i>4): break\n",
     "            \n",
     "        #print(\"{0}\\n{1}:\\t{2}\".format(seq_id,record.id,flag,))\n",
     "        \n",