diff --git a/ProcessFASTQ.ipynb b/ProcessFASTQ.ipynb index 4d8c1140f8a0cc062af1a03f5f97302e3d33bf3a..003a462f121d9795b703080c5a9cfd0c2fcea5d6 100644 --- a/ProcessFASTQ.ipynb +++ b/ProcessFASTQ.ipynb @@ -550,7 +550,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 154, "metadata": { "collapsed": false }, @@ -598,12 +598,28 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 155, "metadata": { "collapsed": false, "scrolled": false }, - "outputs": [], + "outputs": [ + { + "name": "stderr", + "output_type": "stream", + "text": [ + "Time loading forward index: 00:00:00\n", + "Time loading mirror index: 00:00:01\n", + "End-to-end 2/3-mismatch full-index search: 00:02:56\n", + "# reads processed: 32558526\n", + "# reads with at least one reported alignment: 24915112 (76.52%)\n", + "# reads that failed to align: 7643414 (23.48%)\n", + "Reported 24915112 alignments to 1 output stream(s)\n", + "Time searching: 00:02:57\n", + "Overall time: 00:02:57\n" + ] + } + ], "source": [ "%%bash\n", "source ./source\n",