From 94f9be9b92b7b5de76e5a510fdc274341729b7ed Mon Sep 17 00:00:00 2001
From: Julien Cornut <julien.cornut@hesge.ch>
Date: Thu, 25 Feb 2016 18:54:01 +0100
Subject: [PATCH] Automatic Update
---
ProcessFASTQ.ipynb | 36 ++++++++++++++++++++++++++++++------
1 file changed, 30 insertions(+), 6 deletions(-)
diff --git a/ProcessFASTQ.ipynb b/ProcessFASTQ.ipynb
index 228dd7c..2072830 100644
--- a/ProcessFASTQ.ipynb
+++ b/ProcessFASTQ.ipynb
@@ -513,7 +513,7 @@
},
{
"cell_type": "code",
- "execution_count": null,
+ "execution_count": 203,
"metadata": {
"collapsed": false
},
@@ -525,7 +525,7 @@
},
{
"cell_type": "code",
- "execution_count": null,
+ "execution_count": 204,
"metadata": {
"collapsed": true
},
@@ -550,11 +550,19 @@
},
{
"cell_type": "code",
- "execution_count": null,
+ "execution_count": 205,
"metadata": {
"collapsed": false
},
- "outputs": [],
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "Filtering run time : 0:02:37.166601\n"
+ ]
+ }
+ ],
"source": [
"# Store current time\n",
"after = datetime.datetime.now()\n",
@@ -590,12 +598,28 @@
},
{
"cell_type": "code",
- "execution_count": null,
+ "execution_count": 206,
"metadata": {
"collapsed": false,
"scrolled": false
},
- "outputs": [],
+ "outputs": [
+ {
+ "name": "stderr",
+ "output_type": "stream",
+ "text": [
+ "Time loading forward index: 00:00:00\n",
+ "Time loading mirror index: 00:00:00\n",
+ "End-to-end 2/3-mismatch full-index search: 00:00:34\n",
+ "# reads processed: 3112673\n",
+ "# reads with at least one reported alignment: 512682 (16.47%)\n",
+ "# reads that failed to align: 2599991 (83.53%)\n",
+ "Reported 512682 alignments to 1 output stream(s)\n",
+ "Time searching: 00:00:34\n",
+ "Overall time: 00:00:34\n"
+ ]
+ }
+ ],
"source": [
"%%bash\n",
"source ./source\n",
--
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