diff --git a/ProcessFASTQ.ipynb b/ProcessFASTQ.ipynb
index f58862bb0b9790dbe20df6e9330026b01cdd5092..e1f532fc2fdc471daa19303c8299eaf5d1bb2d08 100644
--- a/ProcessFASTQ.ipynb
+++ b/ProcessFASTQ.ipynb
@@ -945,16 +945,223 @@
},
{
"cell_type": "code",
- "execution_count": null,
+ "execution_count": 284,
"metadata": {
- "collapsed": true
+ "collapsed": false
},
- "outputs": [],
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "@HD\tVN:1.0\tSO:unsorted\n",
+ "@SQ\tSN:chrI\tLN:230218\n",
+ "@SQ\tSN:chrII\tLN:813184\n",
+ "@SQ\tSN:chrII\tLN:316620\n",
+ "@SQ\tSN:chrIV\tLN:1531933\n",
+ "@SQ\tSN:chrV\tLN:576874\n",
+ "@SQ\tSN:chrVI\tLN:270161\n",
+ "@SQ\tSN:chrVII\tLN:1090940\n",
+ "@SQ\tSN:chrVII\tLN:562643\n",
+ "@SQ\tSN:chrIX\tLN:439888\n",
+ "@SQ\tSN:chrX\tLN:745751\n",
+ "@SQ\tSN:chrXI\tLN:666816\n",
+ "@SQ\tSN:chrXII\tLN:1078177\n",
+ "@SQ\tSN:chrXIII\tLN:924431\n",
+ "@SQ\tSN:chrXIV\tLN:784333\n",
+ "@SQ\tSN:chrXV\tLN:1091291\n",
+ "@SQ\tSN:chrXVI\tLN:948066\n",
+ "@SQ\tSN:chrM\tLN:85779\n",
+ "@PG\tID:Bowtie\tVN:1.1.2\tCL:\"bowtie --wrapper basic-0 -S -v 2 -p 8 --time --best ref/2-Indexes/SCerevisiae/s_cerevisiae 5-ncRNA-Removed/testing.fastq 6-Genome-Aligned/testing.sam\"\n",
+ "SN279:493:C84L3ACXX:4:2309:1272:2215\t4\t*\t0\t0\t*\t*\t0\t0\tNGAGGACCGAACCGACTTACGTT\t#1=DDFFFGGHHHIIJIJIJJFH\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:1309:2236\t16\tchrXII\t461790\t255\t27M\t*\t0\t0\tTCCGCTTCATTGAATAAGTAAAGAAAG\tJJJJJJJJJJJJJJHHHHHFFDFFCCC\tXA:i:1\tMD:Z:26C0\tNM:i:1\n",
+ "SN279:493:C84L3ACXX:4:2309:2846:2219\t4\t*\t0\t0\t*\t*\t0\t0\tNGACATACCTCTGGTGTACCAGTTGTCGT\t#4=DFDFFHHHHHJGHHIJJIJHJJJJJJ\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:3284:2235\t16\tchrXII\t463559\t255\t24M\t*\t0\t0\tCAGGATCGGTCGATTGTGCACCTC\tJJJJIGJJJJJHHHHHFFDDFC@@\tXA:i:0\tMD:Z:24\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:3264:2245\t16\tchrXII\t454423\t255\t25M\t*\t0\t0\tAGGATCGGTCGATTGTGCACCTCTA\tJJJJJJIJJJJJHHHHHFFFFFCCC\tXA:i:1\tMD:Z:24T0\tNM:i:1\n",
+ "SN279:493:C84L3ACXX:4:2309:3794:2223\t4\t*\t0\t0\t*\t*\t0\t0\tNGCCCCTTAGTGCTGCAGCTAACGCATT\t#4=DFFFFHHFHHJJJJJJJJJJJJJJJ\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:4716:2219\t16\tchrXII\t463560\t255\t24M\t*\t0\t0\tAGGATCGGTCGATTGTGCACCTCN\tJJJJJJJIJJJHHHHHFFFDD=1#\tXA:i:1\tMD:Z:23T0\tNM:i:1\n",
+ "SN279:493:C84L3ACXX:4:2309:4672:2219\t0\tchrM\t62417\t255\t26M\t*\t0\t0\tNTATAATATCTAATCTATTATTCTAT\t#4=DDFDEHHHHHJJJJJJJJJJJJJ\tXA:i:1\tMD:Z:0A25\tNM:i:1\n",
+ "SN279:493:C84L3ACXX:4:2309:4765:2225\t4\t*\t0\t0\t*\t*\t0\t0\tNGTGAATAGGCCCAAGCGACTGTTTATC\t#1=DDFEFHHHHHJIJJJIJJIJJJIJJ\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:5189:2228\t16\tchrXII\t454422\t255\t25M\t*\t0\t0\tCAGGATCGGTCGATTGTGCACCTCT\tEGGCC:F@@HGFA:BHFD=DDD;?@\tXA:i:0\tMD:Z:25\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:1275:2239\t4\t*\t0\t0\t*\t*\t0\t0\tTCAGGTTACCCGCGACAGGACGGAA\tCC@DFDEDHHDFHEEFIIIIGIE:@\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:5407:2223\t4\t*\t0\t0\t*\t*\t0\t0\tNGAGCTAATACATGCTATGTATTTATT\t#4=DFDDFHHHHHJJJJJJJJJJJJGJ\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:5863:2232\t16\tchrXII\t454422\t255\t26M\t*\t0\t0\tCAGGATCGGTCGATTGTGCACCTCTT\tJJJJJJJJJJJJJHHHHHFFFFFCCC\tXA:i:0\tMD:Z:26\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:6688:2224\t4\t*\t0\t0\t*\t*\t0\t0\tNCCCCGTGGAGCTTTACTGTAGCCTGCT\t#1=BDFFFGHHHHJJJJJIHCHIJJI3E\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:6431:2231\t4\t*\t0\t0\t*\t*\t0\t0\tTTGACTGCGAGACCTACAAGTCGAGCCG\tC@CFFFDDHHHHHIJBHIIJFHGGEE)?\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:7219:2217\t16\tchrXII\t454422\t255\t25M\t*\t0\t0\tCAGGATCGGTCGATTGTGCACCTCN\tJJJJJIJJJJJJHHHHHFFFFD=1#\tXA:i:1\tMD:Z:24T0\tNM:i:1\n",
+ "SN279:493:C84L3ACXX:4:2309:7110:2219\t4\t*\t0\t0\t*\t*\t0\t0\tNATACGTAGGTGGCAAGCGTTATCC\t#1=DFFFFHHHHHJJJJJJIJJJJJ\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:7906:2219\t16\tchrXII\t463559\t255\t26M\t*\t0\t0\tCAGGATCGGTCGATTGTGCACCTCTN\tCEFC6IIEFFEDFFDFFDDDDDD=1#\tXA:i:1\tMD:Z:25T0\tNM:i:1\n",
+ "SN279:493:C84L3ACXX:4:2309:7555:2216\t4\t*\t0\t0\t*\t*\t0\t0\tNCCTGCGGAAGGATCACGTTCTCTGTCGGCACTATAAATAGATCGGAAGAG\t#4=DFFFFHHHHHJJJJJJJJJJJJJEIJJJJIGIHHJIIIJJJJJJJJJJ\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:2387:2233\t16\tchrXII\t461751\t255\t27M\t*\t0\t0\tGGGACCTTGAATGCTAGAACGTGAATA\tJJJIJIJJJJJJIJHHHHHFFFFFCCC\tXA:i:2\tMD:Z:23G1A1\tNM:i:2\n",
+ "SN279:493:C84L3ACXX:4:2309:8130:2243\t4\t*\t0\t0\t*\t*\t0\t0\tTAATCGAACTTGGAGATAGCTGGTTCTCTC\tCCCFFFFDHHHHHJJJJJJJJJJJJJJIIJ\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:8370:2229\t16\tchrXII\t489957\t255\t25M\t*\t0\t0\tGACGCCTTATTCGTATCCATCTATA\tHFIHEHACCACHFHHHDFDEFF@CC\tXA:i:0\tMD:Z:25\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:8553:2216\t4\t*\t0\t0\t*\t*\t0\t0\tNCCGCATGGTTCAACAGTGAAAGACGGTC\t#4=DFFFFHDHHHJJJJHJIJJJJJJJJJ\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:9098:2243\t16\tchrXII\t463559\t255\t25M\t*\t0\t0\tCAGGATCGGTCGATTGTGCACCTCT\tJJIJJJJJJJJJHGGHHFFFFFCCC\tXA:i:0\tMD:Z:25\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:9649:2233\t16\tchrVII\t939491\t255\t26M\t*\t0\t0\tAAAAGTTCCAAAAAATATGGCAAGCC\tIJIJIJIJJJJIIFHBHGFFFFFCCC\tXA:i:0\tMD:Z:26\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:9581:2245\t16\tchrXII\t464555\t255\t28M\t*\t0\t0\tGACGCTCAAACAGGCATGCCCCCTGGAA\tJJJJJJJJIIJJJJJHHHHHFFFFFCCC\tXA:i:0\tMD:Z:28\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:10165:2225\t16\tchrXII\t461751\t255\t23M\t*\t0\t0\tGGGACCTTGAATGCTAGAACGTN\tJIIEGIJJJJGHHHHFDDDD=1#\tXA:i:1\tMD:Z:22G0\tNM:i:1\n",
+ "SN279:493:C84L3ACXX:4:2309:8313:2227\t4\t*\t0\t0\t*\t*\t0\t0\tTCGACTACATGAAGCTGGAATCGCT\t@@@FFDADHHFHHJGGGIGHIIIII\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:9194:2231\t4\t*\t0\t0\t*\t*\t0\t0\tAAACCGGAGGAAGTGGGGATGACG\tCCCFFFFAFHHHHHJIJJJJJJJI\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:11532:2223\t16\tchrXII\t463559\t255\t26M\t*\t0\t0\tCAGGATCGGTCGATTGTGCACCTCTN\tJJIJJIIJJJJJJHHHFHDDFDD=4#\tXA:i:1\tMD:Z:25T0\tNM:i:1\n",
+ "SN279:493:C84L3ACXX:4:2309:10386:2243\t4\t*\t0\t0\t*\t*\t0\t0\tGGCGGAGGTGCACAATCGACCGATCCTG\tCCCFFFFFFFHHHJJJJJIIIJJJJJJJ\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:11792:2221\t4\t*\t0\t0\t*\t*\t0\t0\tNCCAGACCACCAGCTAAGGTCCCAAAAT\t#1=DFFFFHHHHHJJJJJJFHIJJJIGJ\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:11332:2236\t4\t*\t0\t0\t*\t*\t0\t0\tTACACGTGCTACAATGGACAATAC\tCCCFFFFFHHHHGGIJJJJJJJJJ\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:12056:2221\t4\t*\t0\t0\t*\t*\t0\t0\tNCGACCGATCCTGACCAGCTAAGGTCTGTAGGCACCATCAAAAAAACGGGA\t#4=DFFFFHHHHHJJJJJJJJIIJCDDD?:9?9*9B(***0)/(-'''-',\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:13489:2242\t16\tchrXII\t455464\t255\t24M\t*\t0\t0\tGCGTTCAAAGATTCGATGATTCAC\tJJJJJJJJIJIFHHHAFDDFF@@@\tXA:i:0\tMD:Z:24\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:11695:2243\t4\t*\t0\t0\t*\t*\t0\t0\tACGTTCTAGCATTCGCACAATCGACC\tCCCDFFDFHHHHHJJJJJJIJJIJJJ\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:13573:2246\t16\tchrXII\t463559\t255\t26M\t*\t0\t0\tCAGGATCGGTCGATTGTGCACCTCTT\tGGHGJFIIGJIGGHHHHHFFDDF@C@\tXA:i:0\tMD:Z:26\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:13806:2227\t4\t*\t0\t0\t*\t*\t0\t0\tNGGTGCCCGTACCGCAAACCGACAC\t#4=BDFFFGHHHHJJJJJJJJJJJJ\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:12047:2245\t4\t*\t0\t0\t*\t*\t0\t0\tTTTCCAGGGGGCATGCCTGTTTGAGCGTCACCTTTGGGCCCCACCAAAAAA\tCCCFFFFFHHHGHJJJJJJJJJJHGBF:0))**/**07(.;4(''((..='\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:14246:2216\t4\t*\t0\t0\t*\t*\t0\t0\tNTGTCATGTTATCGACATGTGAATTC\t#1=DFFFFHHHHHJJJJJJJJJJJJJ\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:13562:2228\t4\t*\t0\t0\t*\t*\t0\t0\tATGCTACGGTGAATACGTTCCCGGGTCT\tCCCFFFFFHDFHHJJJIHIJJJJJJIII\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:14670:2242\t16\tchrXII\t463559\t255\t25M\t*\t0\t0\tCAGGATCGGTCGATTGTGCACCTCT\tJJJJJJJJJJJJHGHHHFFFFFCCC\tXA:i:0\tMD:Z:25\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:14788:2218\t16\tchrXII\t461126\t255\t22M\t*\t0\t0\tGACGCCTTATTCGTATCCATCN\tJJJIJJIJJHDHHHFFFFD=1#\tXA:i:1\tMD:Z:21T0\tNM:i:1\n",
+ "SN279:493:C84L3ACXX:4:2309:14212:2237\t4\t*\t0\t0\t*\t*\t0\t0\tATTAGCTCAGTTGGTAGAGCATCTGACTT\tCCCFFFFFHHHHHJHIJJJJJJJJJJJJJ\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:14401:2237\t4\t*\t0\t0\t*\t*\t0\t0\tAAACGGCATAGCTGGGTAGCTATGTAT\t111=ADDDHHHGHJIJCFGAHIJJJJI\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:16321:2217\t16\tchrXII\t463559\t255\t25M\t*\t0\t0\tCAGGATCGGTCGATTGTGCACCTCN\tJJJJJIJJJJJJHHHHHFFFFD=1#\tXA:i:1\tMD:Z:24T0\tNM:i:1\n",
+ "SN279:493:C84L3ACXX:4:2309:17581:2248\t16\tchrXII\t454422\t255\t25M\t*\t0\t0\tCAGGATCGGTCGATTGTGCACCTCT\tJJJJJJJJJIJJHHHHGFFFFFCCC\tXA:i:0\tMD:Z:25\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:18327:2224\t4\t*\t0\t0\t*\t*\t0\t0\tNTGAGTACGACGGAGCACGTGAAATTCCGTCGGAA\t#1=DDDDDHHHFHIIIIIIIIHIDHHFGHIIIIHG\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:18682:2218\t16\tchrXII\t454422\t255\t25M\t*\t0\t0\tCAGGATCGGTCGATTGTGCACCTCN\tJJJJJJJJJJJJHHHHHFFFFD=1#\tXA:i:1\tMD:Z:24T0\tNM:i:1\n",
+ "SN279:493:C84L3ACXX:4:2309:19749:2247\t16\tchrXII\t463559\t255\t25M\t*\t0\t0\tCAGGATCGGTCGATTGTGCACCTCT\tGD6BIHBFIIDIFHHHHDDDDD@@@\tXA:i:0\tMD:Z:25\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:15529:2233\t4\t*\t0\t0\t*\t*\t0\t0\tCGTACCGCAAACCGACACAGGTAGTCAC\t@CBFFFFFHHHHHJJJJJJJIFGIHIJ>\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:19903:2218\t16\tchrXV\t946970\t255\t29M\t*\t0\t0\tACTTGGTCCACTCTTCGTTAGCTGGGTTN\tGGEC<<?GF<IEIHGGHHFFDB=FDD=4#\tXA:i:1\tMD:Z:28G0\tNM:i:1\n",
+ "SN279:493:C84L3ACXX:4:2309:15090:2234\t4\t*\t0\t0\t*\t*\t0\t0\tAACCAGTACCGTGAGGGAAAGGT\tCCCFFFFFHHHHHIJJJJJJJJH\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:19819:2243\t16\tchrXII\t452614\t255\t23M\t*\t0\t0\tGGGACCTTGAATGCTAGAACGTG\tDFHCHIGIIIHGHGHDADBD@@?\tXA:i:0\tMD:Z:23\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:20117:2220\t4\t*\t0\t0\t*\t*\t0\t0\tNGTGAATAGGCCCAAGCGACTGTTTATC\t#1:DBDEDHHHHH;BEAFEFHIHIJJJJ\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:1157:2418\t16\tchrXII\t463559\t255\t25M\t*\t0\t0\tCAGGATCGGTCGATTGTGCACCTCT\tJJJIIJJJIJJJHHHHHFFFFF@C@\tXA:i:0\tMD:Z:25\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:1198:2252\t0\tchrXVI\t303652\t255\t27M\t*\t0\t0\tAACAGATTCCCAGGTTGGGACTTCGAA\tCCCFFFFFHHHHHJHIJJJJJJJJJGI\tXA:i:0\tMD:Z:27\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:1458:2486\t16\tchrXII\t454422\t255\t26M\t*\t0\t0\tGAGGATCGGTCGATTGTGCACCTCTT\tJJJJJJJIJJIJJHHHHHFFFFFCC@\tXA:i:1\tMD:Z:0C25\tNM:i:1\n",
+ "SN279:493:C84L3ACXX:4:2309:21278:2249\t4\t*\t0\t0\t*\t*\t0\t0\tAACAGGCTTATCTCCCCCAAGAGTTC\t@@@DDAA?C<A2<AC<CD8AC@9FE4\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:1494:2460\t4\t*\t0\t0\t*\t*\t0\t0\tGTGAGCGAGCGAACTCTCGTTAAGG\tCCCFFFFFHGHHGJJJJJJJJIJII\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:1559:2287\t16\tchrXII\t454421\t255\t26M\t*\t0\t0\tTCAGGATCGGTCGATTGTGCACCTCT\tJJJJJJIJJJIJJHHHHHFFFFFCCC\tXA:i:0\tMD:Z:26\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:1539:2395\t16\tchrXII\t463559\t255\t26M\t*\t0\t0\tCAGGATCGGTCGATTGTGCACCTCTT\tJJJJJJJJJJJJJHHHHHFFFFFCCC\tXA:i:0\tMD:Z:26\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:1694:2474\t16\tchrXII\t454422\t255\t26M\t*\t0\t0\tCAGGATCGGTCGATTGTGCACCTCTA\tJJJJJJJJJJJJJHHHHHFFFFFCCC\tXA:i:1\tMD:Z:25T0\tNM:i:1\n",
+ "SN279:493:C84L3ACXX:4:2309:1752:2352\t16\tchrXII\t463558\t255\t27M\t*\t0\t0\tTCAGGATCGGTCGATTGTGCACCTCTA\tJJJJJJJJJJJJJJHHHHHFFFFFCCC\tXA:i:1\tMD:Z:26T0\tNM:i:1\n",
+ "SN279:493:C84L3ACXX:4:2309:1727:2287\t4\t*\t0\t0\t*\t*\t0\t0\tAGGTGCCCGTACCGCAAACCGACAC\tB@@DDFFFHHHHHJIJJIIIJJJGI\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:1518:2450\t4\t*\t0\t0\t*\t*\t0\t0\tAGGTGCCCGTACCGCAAACCGACAC\t@BCDFFFFHHHHHJJJJJJJJJJJJ\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:1777:2357\t4\t*\t0\t0\t*\t*\t0\t0\tCAAGGTGAGCGAGCGAACTCTCGTTAA\tCCCFFFFFGHHGGJJIJJJJIJJIJGI\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:2189:2264\t0\tchrVII\t462627\t255\t29M\t*\t0\t0\tTCAACATCCAGGTAATATTCCAAACAGAG\tCCCFFFFFHHHHDGHJIJJJJJJJJGFGH\tXA:i:1\tMD:Z:0C28\tNM:i:1\n",
+ "SN279:493:C84L3ACXX:4:2309:2227:2329\t4\t*\t0\t0\t*\t*\t0\t0\tAACGGCATAGCTGGGTAGCTATGTATGG\t??@DBDFFBDHHDBBEBBD<FEHCDHFC\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:2113:2287\t4\t*\t0\t0\t*\t*\t0\t0\tATATTACCGAAGCTGTGGATTGTCC\tCCCFFFFFHHHHHJJIJJJJJJIJJ\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:2473:2270\t16\tchrXII\t464551\t255\t28M\t*\t0\t0\tAAATGACGCTCAAACAGGCATGCCCCCT\tJJJJJJJJJJJJJJJHHHHHFFFFFCCC\tXA:i:0\tMD:Z:28\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:2288:2310\t16\tchrXII\t466741\t255\t24M\t*\t0\t0\tAACTATCAAATAAACGATAACTGA\tJJJJJJJJJJJHHHHHFDDFFCCC\tXA:i:0\tMD:Z:24\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:2414:2347\t16\tchrXII\t463559\t255\t25M\t*\t0\t0\tCAGGATCGGTCGATTGTGCACCTCT\tJJJJJJJJJJJJHHHHHFFFFFCCC\tXA:i:0\tMD:Z:25\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:2105:2468\t4\t*\t0\t0\t*\t*\t0\t0\tCAACGGCATAGCTGGGTAGCTATGTATGG\tCCCFFFFFHHHHHJJJFFIIIHIIJHIHI\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:2429:2389\t16\tchrXII\t452614\t255\t24M\t*\t0\t0\tGGGACCTTGAATGCTAGAACGTGA\tJJJIJIIJJJJHHHGHFFFFFCCC\tXA:i:1\tMD:Z:23G0\tNM:i:1\n",
+ "SN279:493:C84L3ACXX:4:2309:2303:2492\t16\tchrXII\t463559\t255\t26M\t*\t0\t0\tCAGGATCGGTCGATTGTGCACCTCTA\tJJJJJJJJIIJJJHHHHHFFFFFCCC\tXA:i:1\tMD:Z:25T0\tNM:i:1\n",
+ "SN279:493:C84L3ACXX:4:2309:2368:2499\t16\tchrXII\t462086\t255\t22M\t*\t0\t0\tTTGGTTGAATTTCTTCACTTTT\tJJJJIIJJJHHHHFFFFFFCCC\tXA:i:1\tMD:Z:21G0\tNM:i:1\n",
+ "SN279:493:C84L3ACXX:4:2309:2345:2352\t4\t*\t0\t0\t*\t*\t0\t0\tGGGAGAACGTTCTAGCATTCAAGGTCCC\t@CCDFDDFHHHHHJJJIIJJJIIJHGGI\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:2214:2391\t4\t*\t0\t0\t*\t*\t0\t0\tAACGCGAAGAACCTTACCAAATC\tCCCFFFFFHHGHHJJIJJIJJJJ\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:2630:2296\t4\t*\t0\t0\t*\t*\t0\t0\tAGCGCAACCCTTAAGCTTAGTTGCC\t@BCFFFFFHHHHHJJJJJJJJJJJJ\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:2634:2410\t4\t*\t0\t0\t*\t*\t0\t0\tGAATGGAGGACCGAACCGACTTA\tCCCFFFFFHHHHHJJJIJJJJJI\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:2733:2418\t4\t*\t0\t0\t*\t*\t0\t0\tGGGGAGAAAGCGTTATTTGGATTTGATC\tCCCFFFFFHHHHHJJJJJJJJJJJJGHI\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:2951:2457\t16\tchrXII\t455418\t255\t24M\t*\t0\t0\tGACGCTCAAACAGGCATGCCCCCT\tJIJJJJJIJHJHHHHHFFFFFCCC\tXA:i:0\tMD:Z:24\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:2909:2478\t16\tchrXII\t454425\t255\t22M\t*\t0\t0\tGATCGGTCGATTGTGCACCTCT\tJJJJJIJJJHHHHHFFFFFCCC\tXA:i:0\tMD:Z:22\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:2656:2420\t4\t*\t0\t0\t*\t*\t0\t0\tTATTCAATGAAGCGGAGGCGAAGAACCTT\tCCCFFFFFHHHGHJJJJJJJJIIJJIJJJ\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:3124:2308\t16\tchrXII\t463559\t255\t25M\t*\t0\t0\tCAGGATCGGTCGATTGTGCACCTCT\tJJJJJJJJJJJJHHHHHFFFFFCCC\tXA:i:0\tMD:Z:25\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:3180:2350\t16\tchrXII\t464555\t255\t27M\t*\t0\t0\tGACGCTCAAACAGGCATGCCCCCTGGA\tIHIHIGIEHEIIJJHHGHHFDEFFC@C\tXA:i:0\tMD:Z:27\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:3204:2351\t16\tchrXII\t457091\t255\t24M\t*\t0\t0\tCCAAAGTTCAACTACGAGCTTTTT\tJJJJJJJJJJJHHHHHFFFFFCCC\tXA:i:0\tMD:Z:24\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:2786:2295\t4\t*\t0\t0\t*\t*\t0\t0\tAACGCGAAGAACCTTACCAAATCT\tCCCFFFFFHHHHHJJJJJJJJJJJ\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:3244:2440\t0\tchrXV\t445400\t255\t26M\t*\t0\t0\tTCAAGAAAGACTCACAGAGGTCTAAG\tCCCFFFFFHHHHHJJJJIJJJJIJJJ\tXA:i:1\tMD:Z:0C25\tNM:i:1\n",
+ "SN279:493:C84L3ACXX:4:2309:3169:2343\t4\t*\t0\t0\t*\t*\t0\t0\tTGAAGTTCGGTCCCTATCCGTCGTGGGCGT\t@@@DFFFFFDCFFFEHGECEHGGAFH@FGA\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:3044:2371\t4\t*\t0\t0\t*\t*\t0\t0\tTGGAGGACCGAACCGACTTACGTT\tCCCFFFFFHHHGHJJJJJJJJJIJ\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:3178:2447\t4\t*\t0\t0\t*\t*\t0\t0\tTCGCCGCTTACTTATTCAATGAAGCGGAG\tCCCFFFFFHHHHHIJJJJJJJJJJJJJJJ\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:3334:2318\t16\tchrXII\t464551\t255\t28M\t*\t0\t0\tAAATGACGCTCAAACAGGCATGCCCCCT\tJJJJIHJJJJJJIGJHHHHHFFFFFCCC\tXA:i:0\tMD:Z:28\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:3287:2333\t16\tchrXII\t454422\t255\t25M\t*\t0\t0\tCAGGATCGGTCGATTGTGCACCTCT\tJJJJJJJJJJJJHHHHHFFFFFCCC\tXA:i:0\tMD:Z:25\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:3390:2295\t4\t*\t0\t0\t*\t*\t0\t0\tGACAGGACGGAAGCTGTGGATTGTCC\tCCCFFFFFHHHHHJJJGIJJJJJHII\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:3705:2369\t16\tchrXII\t463562\t255\t22M\t*\t0\t0\tGATCGGTCGATTGTGCACATCT\tJIJJJJJJIGHHHGFFFFFCCC\tXA:i:1\tMD:Z:18C3\tNM:i:1\n",
+ "SN279:493:C84L3ACXX:4:2309:3654:2357\t4\t*\t0\t0\t*\t*\t0\t0\tCGTTCGGTCCCTATCCGTCGTGGGCGT\tBCBFFFFFHHHHHJJJJHIJJJIJJIG\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:3707:2484\t16\tchrXII\t454422\t255\t25M\t*\t0\t0\tCAGGATCGGTCGATTGTGCACCTCT\tJJJJIIJJJJJJHHHHHFFFFFCCC\tXA:i:0\tMD:Z:25\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:3384:2400\t4\t*\t0\t0\t*\t*\t0\t0\tATAAGATCCCTCGAAGATGACGAGGT\tCCCFFFFEHHHHHJJJJIJJJJJJJH\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:3954:2297\t16\tchrXII\t452614\t255\t23M\t*\t0\t0\tGGGACCTTGAATGCTAGAACGTG\tJJJIJJJJJJHHHHHFDDDFCCB\tXA:i:0\tMD:Z:23\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:3862:2276\t16\tchrXII\t453245\t255\t25M\t*\t0\t0\tATCCTTATCCCGAAGTTACGGATCT\tJJJJJJJJJJJJHHHHHFFFFFCCC\tXA:i:0\tMD:Z:25\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:3748:2409\t4\t*\t0\t0\t*\t*\t0\t0\tCCGAAATAGCTTTAGGGCTAGCCTCAAGT\tCCCFFFDDHHHHGJIIJJJJJJJJJGGII\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:4131:2262\t16\tchrXII\t464556\t255\t29M\t*\t0\t0\tACGCTCAAACAGGCATGCCCCCTGGAATA\tIJGJIJJJJJJJJJJJHHGHHFFFFFCCC\tXA:i:0\tMD:Z:29\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:4235:2419\t16\tchrXII\t463559\t255\t26M\t*\t0\t0\tCAGGATCGGTCGATTGTGCACCTCTT\tJJJJJIJJJJJJJHHHHHFFFFFCCC\tXA:i:0\tMD:Z:26\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:4160:2462\t16\tchrXII\t463559\t255\t26M\t*\t0\t0\tCAGGATCGGTCGATTGTGCACCTCTT\tJJJJJJJJJJJJJHHHHHFFFFFCCC\tXA:i:0\tMD:Z:26\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:4278:2284\t16\tchrXII\t489957\t255\t22M\t*\t0\t0\tGACGCCTTATTCGTATCCATCT\tJIJJIHIGCAAHHHFFFFFCCC\tXA:i:0\tMD:Z:22\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:4463:2339\t16\tchrXII\t463558\t255\t26M\t*\t0\t0\tTCAGGATCGGTCGATTGTGCACCTCT\tIJIJJJJJJJIJJHHHHHFFFFFCCC\tXA:i:0\tMD:Z:26\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:3896:2434\t4\t*\t0\t0\t*\t*\t0\t0\tATGTACACGGAGTCGAGCCCCGCA\tCCCFFFFFHHHHFHIJJIJJJJJJ\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:4027:2498\t4\t*\t0\t0\t*\t*\t0\t0\tGGGAGGGTTACTTATTCAATGAAGCGGAC\tCCCFFFFDHHHHHJJJJJJJJJIIIJIJJ\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:4476:2354\t4\t*\t0\t0\t*\t*\t0\t0\tAGTTGGGCACTCTAAGTTGACTGCCGG\t@C@DFFFFHHHHHJIIGIIJIJHIIIJ\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:4432:2416\t4\t*\t0\t0\t*\t*\t0\t0\tTCGCCCATTAAAGCGGTACGCGAGCTGGGT\tCCCFFFFFHHHHHJJJHIJIJIJJJJJJJJ\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:4278:2449\t4\t*\t0\t0\t*\t*\t0\t0\tGAATAGGCCCAAGCGACTGTTT\tCCCFFFFFHHHHHJJJJJJJJJ\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:4452:2498\t4\t*\t0\t0\t*\t*\t0\t0\tGCCCCTTAGTGCTGCAGCTAACGCAT\tCCCFFDFEHFHHHJJJJJJJJJJJJJ\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:4561:2359\t16\tchrXII\t455414\t255\t28M\t*\t0\t0\tAAATGACGCTCAAACAGGCATGCCCCCT\tGIHEGHGGHGHEGFGHFDFFDAFFF@CC\tXA:i:0\tMD:Z:28\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:4768:2286\t16\tchrXII\t457708\t255\t25M\t*\t0\t0\tGACTACTGGCAGGATCAACCAGATA\tJJJIHJJJJIJJHHHGHEFFFFCCC\tXA:i:0\tMD:Z:25\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:4426:2479\t4\t*\t0\t0\t*\t*\t0\t0\tACCTGCGGAAGGATCAGGGTTGA\tCCCFFFFFHHGHHJJJJJJJIJF\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:4920:2307\t16\tchrXII\t454422\t255\t25M\t*\t0\t0\tCAGGATCGGTCGATTGTGCACCTCG\tJJIJIJJJIJJJHHHHHFFFFFCCC\tXA:i:1\tMD:Z:24T0\tNM:i:1\n",
+ "SN279:493:C84L3ACXX:4:2309:4910:2446\t16\tchrXII\t454422\t255\t26M\t*\t0\t0\tCAGGATCGGTCGATTGTGCACCTCTT\tJJJJJJJJJIJJJHHHGHFFFFFCCC\tXA:i:0\tMD:Z:26\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:5482:2282\t16\tchrXII\t454422\t255\t26M\t*\t0\t0\tCAGGATCGGTCGATTGTGCACCTCTT\tJJJJJJJJJJJJJHHHHHFFFFFCCC\tXA:i:0\tMD:Z:26\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:5328:2408\t16\tchrXII\t463559\t255\t25M\t*\t0\t0\tCAGGATCGGTCGATTGTGCACCTCT\tJJJJJJJJJJJJHHHHHFFFFFCCC\tXA:i:0\tMD:Z:25\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:5358:2347\t4\t*\t0\t0\t*\t*\t0\t0\tAGGTGCCCGTACCGCAAACCGACAC\tBBCDFFFFHHHHHJJJJJJJJJJIJ\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:5284:2447\t16\tchrXII\t464555\t255\t24M\t*\t0\t0\tGACGCTCAAACAGGCATGCCCCCT\tJJJJJIIJJJJHHHHHFFFFFCCC\tXA:i:0\tMD:Z:24\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:5682:2342\t16\tchrXII\t454861\t255\t26M\t*\t0\t0\tGCTTTAGATGGAATTTACCACCCAAT\tIIIJJJJHGIIIJHHHHHFFFFFCCC\tXA:i:1\tMD:Z:24C1\tNM:i:1\n",
+ "SN279:493:C84L3ACXX:4:2309:5371:2373\t4\t*\t0\t0\t*\t*\t0\t0\tTAGACGAATCATCTGGAAAGATGAATC\tCCCFFFFFHHHHHJJJJIJJJJJJJJI\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:5262:2474\t4\t*\t0\t0\t*\t*\t0\t0\tAAAAAGCGGTAGAGGTGCACAATCGACCGATCCT\tCCCFFFFFHHHHHJJFHIJJJJJIJIIDHIJJJI\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:5513:2407\t4\t*\t0\t0\t*\t*\t0\t0\tTCGCCCATTAAAGCGGTACGCGAGCT\tCCCFFFFFHHHHHJJJIJJJJJJJJJ\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:5509:2457\t16\tchrXII\t454422\t255\t25M\t*\t0\t0\tCAGGATCGGTCGATTGTGCACCTCT\tJJJIJJJJJJJJHHHHHFFFFFCCC\tXA:i:0\tMD:Z:25\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:5596:2438\t4\t*\t0\t0\t*\t*\t0\t0\tACGAGAGTTTGTAACACCCGAAGCCGGTGGA\tCCCFFDFDHHHHHGHJJJJJJIJJJJJIJJJ\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:5876:2461\t16\tchrXII\t454422\t255\t26M\t*\t0\t0\tCAGGATCGGTCGATTGTGCACCTCTA\tJJJJJJJJJJJJJHHHHHFFFFFCCC\tXA:i:1\tMD:Z:25T0\tNM:i:1\n",
+ "SN279:493:C84L3ACXX:4:2309:5972:2474\t16\tchrXII\t461126\t255\t25M\t*\t0\t0\tGACGCCTTATTCGTATCCATCTATG\tJJJIIHIGEAAJHHHHHFFFFFCCC\tXA:i:1\tMD:Z:24A0\tNM:i:1\n",
+ "SN279:493:C84L3ACXX:4:2309:5855:2404\t4\t*\t0\t0\t*\t*\t0\t0\tAAGATCCCTCGAAGATGACGAGGTTAAT\tCCCFFFFFHHHHHJJJJJJJJJJGHIJI\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:6020:2318\t4\t*\t0\t0\t*\t*\t0\t0\tATGCTACGGTGAATACGTTCCCGGGTCTTG\tCCCFFFFFHHHHHJJJIHIJJJJJJJJJJJ\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:6012:2383\t4\t*\t0\t0\t*\t*\t0\t0\tCGCCCCTTAGTGCTGCAGCTAACGCATT\tCCCFFFFFHHHHHJJJJJJJJJJJJJJJ\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:6062:2451\t16\tchrXII\t455462\t255\t26M\t*\t0\t0\tGTGCGTTCAAAGATTCGATGATTCAC\tJJJJJJJJJJJJJHHHHHEDDFFC@B\tXA:i:0\tMD:Z:26\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:6097:2469\t16\tchrXII\t463559\t255\t26M\t*\t0\t0\tCAGGATCGGTCGATTGTGCACCTCTT\tIIHJJJJJJJJJJHHHGHFFFFFCCC\tXA:i:0\tMD:Z:26\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:6185:2427\t4\t*\t0\t0\t*\t*\t0\t0\tAGATACCCTGGTAGTCCACGCCGT\tCCCFFFDFHHHHFIIJJIJJJJJJ\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:6255:2308\t16\tchrXII\t456920\t255\t23M\t*\t0\t0\tATTCTATTATTCCATGCTAATAT\tJIJJJJJJJJHHHHHFFFFFCCC\tXA:i:0\tMD:Z:23\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:6176:2456\t4\t*\t0\t0\t*\t*\t0\t0\tTCTGGTGACAGGATGCTAAGAACC\tCCCFFFFFHHHHHJJJJIIHIIJJ\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:6336:2280\t4\t*\t0\t0\t*\t*\t0\t0\tGAGAGAGCCACGAATCGAAGCCCCAG\tCCCFFFFFHHHHGJIIJIJIJJHIGJ\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:6479:2328\t16\tchrXII\t454422\t255\t25M\t*\t0\t0\tCAGGATCGGTCGATTGTGCACCTCT\tJJJJJIJJJJJJHHHHHFFFFFCCC\tXA:i:0\tMD:Z:25\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:6480:2449\t16\tchrXII\t455462\t255\t26M\t*\t0\t0\tGTGCGTTCAAAGATTCGATGATTCAC\tJJJJJJJJJJJJIHGHHHFDDFFCBB\tXA:i:0\tMD:Z:26\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:6486:2357\t4\t*\t0\t0\t*\t*\t0\t0\tTAGACGAATCATCTGGAAAGATGAATC\tCCCFFFFFHHHHHJJJJJIJJJJIJJJ\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:6589:2309\t4\t*\t0\t0\t*\t*\t0\t0\tGGGCACTCTAAGTTGACTGCCGGTGAC\tBCCFFFFFHHHHHJJJJJJJJJJGIJI\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:6566:2297\t16\tchrXII\t463558\t255\t27M\t*\t0\t0\tGCAGGATCGGTCGATTGTGCACCTCTA\t>JJJJJIIGJJJJJHHHHHFFFFFCCC\tXA:i:2\tMD:Z:0T25T0\tNM:i:2\n",
+ "SN279:493:C84L3ACXX:4:2309:6531:2439\t16\tchrXII\t454422\t255\t25M\t*\t0\t0\tCAGGATCGGTCGATTGTGCACCTCT\tJJJJJJJJJJJJHHHHHFFFFFCCC\tXA:i:0\tMD:Z:25\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:6787:2349\t16\tchrXII\t454422\t255\t25M\t*\t0\t0\tCAGGATCGGTCGATTGTGCACCTCT\tJJJJJJJJJJJJHHHHHFFFFFCCC\tXA:i:0\tMD:Z:25\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:6862:2360\t16\tchrXII\t454422\t255\t25M\t*\t0\t0\tCAGGATCGGTCGATTGTGCACCTCT\tJJJJJJJJJJIJHHGHHFFFFFCCC\tXA:i:0\tMD:Z:25\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:6692:2314\t4\t*\t0\t0\t*\t*\t0\t0\tTGTGCCAACGGCATAGCTGGGTAGCT\tBCBFFFFFHHHFHJIJJIJJJFHJIJ\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:6995:2320\t4\t*\t0\t0\t*\t*\t0\t0\tTAGCGAAAGACGGGTGAGAATCCCGTCCAC\t@@@?DDDAHHHD?CEFHIE@GE?CGBGHHA\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:7711:2265\t16\tchrXII\t452614\t255\t23M\t*\t0\t0\tGGGACCTTGAATGCTAGAACGTG\tJIIHHJJJJJHFHHHFDDFFCCC\tXA:i:0\tMD:Z:23\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:7529:2264\t16\tchrXII\t455152\t255\t25M\t*\t0\t0\tCGGGTACTCCTACCTGATTTGAGGT\tJJJIGHJJJJIGHHHHHFFFFFCCC\tXA:i:0\tMD:Z:25\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:7677:2365\t16\tchrXII\t454422\t255\t25M\t*\t0\t0\tCAGGATCGGTCGATTGTGCACCTCT\tJJJJJJJJJJJJHHHHHFFFFFCCC\tXA:i:0\tMD:Z:25\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:7468:2473\t4\t*\t0\t0\t*\t*\t0\t0\tGAATGGAGGACCGAACCGACTTACGT\tCBCFFFFFHHHHHJJJJJJJJJIJJI\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:7534:2375\t16\tchrXII\t464555\t255\t30M\t*\t0\t0\tGACGCTCAAACAGGCATGCCCCCTGGAATA\tJJJIIGIIIHJJJJJIJHHGHGFFFFFCCC\tXA:i:0\tMD:Z:30\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:7521:2464\t16\tchrXII\t464555\t255\t24M\t*\t0\t0\tGACGCTCAAACAGGCATGCCCCCT\tJJJJIGJJJJJHHHHHFFFFFCCC\tXA:i:0\tMD:Z:24\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:7646:2396\t4\t*\t0\t0\t*\t*\t0\t0\tAACGCCGCGTGAGTGAAGAAGGTCTT\t@CCFFFFFHHHHHHIIJJIJJIGIJJ\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:7847:2282\t4\t*\t0\t0\t*\t*\t0\t0\tTACACCACGAGAGTTTGTAACACCCG\tCCCFFFFFHHHGHFHIIHHHIAHIJJ\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:7948:2448\t0\tchrII\t138759\t255\t23M\t*\t0\t0\tAGGTGTTTTCGAATTCGAAAAGT\t@BCBDFFFHHHHHJJJJGJJJJI\tXA:i:0\tMD:Z:23\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:8000:2463\t16\tchrXII\t454422\t255\t25M\t*\t0\t0\tCAGGATCGGTCGATTGTGCACCTCT\tJJJJJJJJJJJJHHHHGFFFFFCCC\tXA:i:0\tMD:Z:25\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:7967:2386\t4\t*\t0\t0\t*\t*\t0\t0\tTCGATCCTGACGTGAAATTCCGTCGG\tCCCFFFFFHHHHFIGIJJJJJJJIIJ\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:8085:2451\t16\tchrXII\t452614\t255\t22M\t*\t0\t0\tGGGACCTTGAATGCTAGAACGT\tJJIIIIJJIHHHHHFDFFDCCB\tXA:i:0\tMD:Z:22\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:8149:2381\t4\t*\t0\t0\t*\t*\t0\t0\tTCGCCCATTAAAGCGGTACGCGAGCTGGGT\tCCCFFFFFHHHHHJJJIJJJJJJJJJJJJI\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:8136:2269\t4\t*\t0\t0\t*\t*\t0\t0\tTGGAAGCTTGTTGGGGTTGTAGGACA\tCCCFFFFFHHHHHIJJHIJIGHIIJJ\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:8447:2390\t16\tchrXII\t454425\t255\t23M\t*\t0\t0\tGATCGGTCGATTGTGCACCTCTT\tJJIHGJJJJJHHHHHFFFFFCCC\tXA:i:0\tMD:Z:23\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:8394:2273\t4\t*\t0\t0\t*\t*\t0\t0\tAATGAAGCGGAGAGAACGCGGTGATTT\tCCCFFFFFHHGHHJIJJIJJJDGIIJJ\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:8471:2318\t4\t*\t0\t0\t*\t*\t0\t0\tGACTGAGTTGCAAGGATTGATAATACCACT\tCCCFFFFFHHHHHJJIIJJJJJJJJJ<GII\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:8735:2345\t16\tchrXII\t463559\t255\t26M\t*\t0\t0\tCAGGATCGGTCGATTGTGCACCTCTT\tJJJJJJJJJGJJJHHHHHFFFFFCCC\tXA:i:0\tMD:Z:26\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:8620:2408\t16\tchrXII\t463559\t255\t25M\t*\t0\t0\tCAGGATCGGTCGATTGTGCACCTCT\tJJJJJIJJJJJJHHHHHFFFFFCCC\tXA:i:0\tMD:Z:25\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:8439:2484\t4\t*\t0\t0\t*\t*\t0\t0\tAAGGGCGCACGGTGGATGCCTTGGC\tCCCFFFFFFHHHFHIIJJJJJJJJJ\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:8638:2430\t16\tchrXII\t452614\t255\t25M\t*\t0\t0\tGGGACCTTGAATGCTAGAACGTGGA\tJJIHJIIJIJJJHHHHHFFFFFCCC\tXA:i:0\tMD:Z:25\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:8264:2495\t4\t*\t0\t0\t*\t*\t0\t0\tAATGAAGCGGATCCTTGAGTCGT\tCCCFFFFFHHHHHJIIJJJIIJJ\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:8577:2473\t4\t*\t0\t0\t*\t*\t0\t0\tAGTTGGTAAGGTAACGGCTTACCAAGGC\t@@=BDDFFHHGCDGHIIIGGGIHC@GGE\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:8760:2327\t16\tchrVII\t883753\t255\t23M\t*\t0\t0\tCAATTCTCATGACCAATCTACCG\tJJJIJJIJIIHHHHHFFFDDCBB\tXA:i:0\tMD:Z:23\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:8819:2493\t16\tchrXII\t455414\t255\t28M\t*\t0\t0\tAAATGACGCTCAAACAGGCATGCCCCCT\tJIHGIGJJJJJJJJJHHHHHFFFFFCCC\tXA:i:0\tMD:Z:28\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:9238:2275\t16\tchrXII\t454422\t255\t25M\t*\t0\t0\tCAGGATCGGTCGATTGTGCACCTCT\tJIJJJJJJJJJJHHGHHFFFFFCCC\tXA:i:0\tMD:Z:25\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:9156:2310\t16\tchrXII\t454422\t255\t25M\t*\t0\t0\tCAGGATCGGTCGATTGTGCACCTCT\tJJJJJJJJJIJIHHHHHFFFFFCCC\tXA:i:0\tMD:Z:25\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:8567:2410\t4\t*\t0\t0\t*\t*\t0\t0\tATTAGTTGATGATTCATAATAACT\tCCCFFFFFHHHFHIJJJIJJJIJJ\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:9081:2371\t16\tchrXII\t454422\t255\t25M\t*\t0\t0\tCAGGATCGGTCGATTGTGCACCTCT\tJJJJHEJJJIJJHHHHHFFFFFCCC\tXA:i:0\tMD:Z:25\tNM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:9027:2282\t4\t*\t0\t0\t*\t*\t0\t0\tATGCTACGGTGAATACGTTCCCGGGTC\tCCCFFFFFHHHGHJJJIGIJJJJJJIJ\tXM:i:0\n",
+ "SN279:493:C84L3ACXX:4:2309:9173:2373\t4\t*\t0\t0\t*\t*\t0\t0\tAAGATCCCTCGAAGATGACGAGGTT\tCCCFFFFFHHHHHJIJJIJJJJJHI\tXM:i:0\n"
+ ]
+ }
+ ],
"source": [
"%%bash\n",
"source ./source\n",
"\n",
- "head "
+ "head -n 200 6-Genome-Aligned/$FILENAME.sam"
]
},
{