From cfe8e79a20594caba15f3cc517bb16a2d23761d5 Mon Sep 17 00:00:00 2001
From: Julien Cornut <julien.cornut@hesge.ch>
Date: Fri, 26 Feb 2016 12:24:01 +0100
Subject: [PATCH] Automatic Update
---
ProcessFASTQ.ipynb | 915 ++-------------------------------------------
1 file changed, 24 insertions(+), 891 deletions(-)
diff --git a/ProcessFASTQ.ipynb b/ProcessFASTQ.ipynb
index ccdf43a..00480df 100644
--- a/ProcessFASTQ.ipynb
+++ b/ProcessFASTQ.ipynb
@@ -128,6 +128,9 @@
"# This lib is needed to parse fastq easily\n",
"from Bio import SeqIO\n",
"\n",
+ "# Prettify arrays\n",
+ "from pprint import pprint\n",
+ "\n",
"# This lib is used to avoid using a bash magic cell to copy a file\n",
"from shutil import copyfile\n",
"\n",
@@ -683,7 +686,7 @@
},
{
"cell_type": "code",
- "execution_count": 259,
+ "execution_count": 262,
"metadata": {
"collapsed": false
},
@@ -698,896 +701,23 @@
"\n",
"@PG\tID:Bowtie\tVN:1.1.2\tCL:\"bowtie --wrapper basic-0 -S -v 3 -p 8 --time --best ref/2-Indexes/Yeast-Noncoding/Yeast-Noncoding 3-Filtered/testing.fastq 4-Bowtied/testing.sam\"\n",
"\n",
- "SN279:493:C84L3ACXX:4:2309:1272:2215\n",
- "SN279:493:C84L3ACXX:4:2309:1272:2215:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:1275:2239\n",
- "SN279:493:C84L3ACXX:4:2309:1309:2236:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:2182:2231\n",
- "SN279:493:C84L3ACXX:4:2309:1275:2239:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:1886:2219\n",
- "SN279:493:C84L3ACXX:4:2309:2387:2233:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:2846:2219\n",
- "SN279:493:C84L3ACXX:4:2309:2846:2219:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:3323:2241\n",
- "SN279:493:C84L3ACXX:4:2309:3284:2235:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:3794:2223\n",
- "SN279:493:C84L3ACXX:4:2309:3264:2245:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:3694:2243\n",
- "SN279:493:C84L3ACXX:4:2309:3794:2223:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:4765:2225\n",
- "SN279:493:C84L3ACXX:4:2309:4716:2219:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:5144:2245\n",
- "SN279:493:C84L3ACXX:4:2309:4672:2219:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:5407:2223\n",
- "SN279:493:C84L3ACXX:4:2309:4765:2225:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:4867:2237\n",
- "SN279:493:C84L3ACXX:4:2309:5189:2228:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:5511:2220\n",
- "SN279:493:C84L3ACXX:4:2309:5407:2223:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:6688:2224\n",
- "SN279:493:C84L3ACXX:4:2309:5863:2232:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:7110:2219\n",
- "SN279:493:C84L3ACXX:4:2309:6431:2231:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:7271:2225\n",
- "SN279:493:C84L3ACXX:4:2309:6688:2224:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:7555:2216\n",
- "SN279:493:C84L3ACXX:4:2309:7219:2217:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:6431:2231\n",
- "SN279:493:C84L3ACXX:4:2309:7110:2219:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:8438:2217\n",
- "SN279:493:C84L3ACXX:4:2309:7555:2216:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:8313:2227\n",
- "SN279:493:C84L3ACXX:4:2309:7906:2219:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:8553:2216\n",
- "SN279:493:C84L3ACXX:4:2309:8130:2243:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:8130:2243\n",
- "SN279:493:C84L3ACXX:4:2309:8313:2227:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:8418:2243\n",
- "SN279:493:C84L3ACXX:4:2309:8370:2229:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:4107:2247\n",
- "SN279:493:C84L3ACXX:4:2309:8553:2216:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:9634:2218\n",
- "SN279:493:C84L3ACXX:4:2309:9194:2231:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:9194:2231\n",
- "SN279:493:C84L3ACXX:4:2309:9098:2243:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:9492:2220\n",
- "SN279:493:C84L3ACXX:4:2309:9649:2233:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:3635:2221\n",
- "SN279:493:C84L3ACXX:4:2309:9581:2245:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:10229:2232\n",
- "SN279:493:C84L3ACXX:4:2309:10165:2225:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:10845:2215\n",
- "SN279:493:C84L3ACXX:4:2309:10386:2243:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:11332:2236\n",
- "SN279:493:C84L3ACXX:4:2309:11332:2236:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:11695:2243\n",
- "SN279:493:C84L3ACXX:4:2309:11532:2223:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:12056:2221\n",
- "SN279:493:C84L3ACXX:4:2309:11695:2243:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:11792:2221\n",
- "SN279:493:C84L3ACXX:4:2309:11792:2221:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:12299:2218\n",
- "SN279:493:C84L3ACXX:4:2309:12056:2221:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:12775:2215\n",
- "SN279:493:C84L3ACXX:4:2309:12047:2245:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:12047:2245\n",
- "SN279:493:C84L3ACXX:4:2309:13489:2242:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:13806:2227\n",
- "SN279:493:C84L3ACXX:4:2309:13562:2228:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:14246:2216\n",
- "SN279:493:C84L3ACXX:4:2309:13573:2246:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:13761:2236\n",
- "SN279:493:C84L3ACXX:4:2309:13806:2227:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:13562:2228\n",
- "SN279:493:C84L3ACXX:4:2309:14246:2216:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:14401:2237\n",
- "SN279:493:C84L3ACXX:4:2309:14212:2237:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:14212:2237\n",
- "SN279:493:C84L3ACXX:4:2309:14401:2237:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:15204:2216\n",
- "SN279:493:C84L3ACXX:4:2309:14670:2242:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:15489:2235\n",
- "SN279:493:C84L3ACXX:4:2309:14788:2218:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:15090:2234\n",
- "SN279:493:C84L3ACXX:4:2309:15090:2234:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:15627:2249\n",
- "SN279:493:C84L3ACXX:4:2309:15529:2233:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:15529:2233\n",
- "SN279:493:C84L3ACXX:4:2309:16321:2217:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:18327:2224\n",
- "SN279:493:C84L3ACXX:4:2309:17581:2248:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:16766:2231\n",
- "SN279:493:C84L3ACXX:4:2309:18327:2224:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:17561:2229\n",
- "SN279:493:C84L3ACXX:4:2309:18682:2218:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:20117:2220\n",
- "SN279:493:C84L3ACXX:4:2309:19749:2247:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:19903:2218\n",
- "SN279:493:C84L3ACXX:4:2309:19903:2218:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:20333:2218\n",
- "SN279:493:C84L3ACXX:4:2309:19819:2243:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:20716:2234\n",
- "SN279:493:C84L3ACXX:4:2309:20117:2220:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:21278:2249\n",
- "SN279:493:C84L3ACXX:4:2309:21278:2249:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:1198:2252\n",
- "SN279:493:C84L3ACXX:4:2309:1198:2252:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:1457:2336\n",
- "SN279:493:C84L3ACXX:4:2309:1157:2418:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:1727:2287\n",
- "SN279:493:C84L3ACXX:4:2309:1494:2460:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:1494:2460\n",
- "SN279:493:C84L3ACXX:4:2309:1458:2486:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:1310:2440\n",
- "SN279:493:C84L3ACXX:4:2309:1727:2287:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:1689:2309\n",
- "SN279:493:C84L3ACXX:4:2309:1559:2287:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:1512:2339\n",
- "SN279:493:C84L3ACXX:4:2309:1539:2395:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:1518:2450\n",
- "SN279:493:C84L3ACXX:4:2309:1518:2450:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:1777:2357\n",
- "SN279:493:C84L3ACXX:4:2309:1694:2474:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:1944:2321\n",
- "SN279:493:C84L3ACXX:4:2309:1752:2352:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:2189:2264\n",
- "SN279:493:C84L3ACXX:4:2309:1777:2357:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:1865:2479\n",
- "SN279:493:C84L3ACXX:4:2309:2189:2264:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:2113:2287\n",
- "SN279:493:C84L3ACXX:4:2309:2113:2287:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:2227:2329\n",
- "SN279:493:C84L3ACXX:4:2309:2227:2329:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:2105:2468\n",
- "SN279:493:C84L3ACXX:4:2309:2214:2391:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:2041:2360\n",
- "SN279:493:C84L3ACXX:4:2309:2105:2468:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:11239:2215\n",
- "SN279:493:C84L3ACXX:4:2309:2473:2270:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:2214:2391\n",
- "SN279:493:C84L3ACXX:4:2309:2288:2310:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:2259:2312\n",
- "SN279:493:C84L3ACXX:4:2309:2414:2347:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:2345:2352\n",
- "SN279:493:C84L3ACXX:4:2309:2345:2352:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:2279:2345\n",
- "SN279:493:C84L3ACXX:4:2309:2429:2389:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:2432:2443\n",
- "SN279:493:C84L3ACXX:4:2309:2303:2492:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:2634:2410\n",
- "SN279:493:C84L3ACXX:4:2309:2368:2499:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:2630:2296\n",
- "SN279:493:C84L3ACXX:4:2309:2630:2296:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:2656:2420\n",
- "SN279:493:C84L3ACXX:4:2309:2634:2410:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:2733:2418\n",
- "SN279:493:C84L3ACXX:4:2309:2733:2418:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:2513:2438\n",
- "SN279:493:C84L3ACXX:4:2309:2656:2420:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:2966:2269\n",
- "SN279:493:C84L3ACXX:4:2309:2786:2295:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:2767:2409\n",
- "SN279:493:C84L3ACXX:4:2309:2951:2457:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:2786:2295\n",
- "SN279:493:C84L3ACXX:4:2309:2909:2478:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:2767:2463\n",
- "SN279:493:C84L3ACXX:4:2309:3124:2308:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:3169:2343\n",
- "SN279:493:C84L3ACXX:4:2309:3169:2343:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:3079:2325\n",
- "SN279:493:C84L3ACXX:4:2309:3180:2350:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:3244:2440\n",
- "SN279:493:C84L3ACXX:4:2309:3204:2351:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:3178:2447\n",
- "SN279:493:C84L3ACXX:4:2309:3044:2371:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:3044:2371\n",
- "SN279:493:C84L3ACXX:4:2309:3244:2440:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:3157:2471\n",
- "SN279:493:C84L3ACXX:4:2309:3178:2447:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:3297:2252\n",
- "SN279:493:C84L3ACXX:4:2309:3390:2295:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:3097:2491\n",
- "SN279:493:C84L3ACXX:4:2309:3334:2318:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:3476:2356\n",
- "SN279:493:C84L3ACXX:4:2309:3287:2333:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:3390:2295\n",
- "SN279:493:C84L3ACXX:4:2309:3384:2400:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:3251:2466\n",
- "SN279:493:C84L3ACXX:4:2309:3654:2357:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:3654:2357\n",
- "SN279:493:C84L3ACXX:4:2309:3705:2369:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:3568:2385\n",
- "SN279:493:C84L3ACXX:4:2309:3748:2409:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:3682:2399\n",
- "SN279:493:C84L3ACXX:4:2309:3707:2484:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:3748:2409\n",
- "SN279:493:C84L3ACXX:4:2309:3862:2276:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:3954:2330\n",
- "SN279:493:C84L3ACXX:4:2309:3954:2297:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:3900:2484\n",
- "SN279:493:C84L3ACXX:4:2309:3896:2434:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:3384:2400\n",
- "SN279:493:C84L3ACXX:4:2309:4131:2262:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:4047:2441\n",
- "SN279:493:C84L3ACXX:4:2309:4235:2419:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:4229:2494\n",
- "SN279:493:C84L3ACXX:4:2309:4160:2462:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:4083:2319\n",
- "SN279:493:C84L3ACXX:4:2309:4027:2498:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:4027:2498\n",
- "SN279:493:C84L3ACXX:4:2309:4278:2284:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:4476:2354\n",
- "SN279:493:C84L3ACXX:4:2309:4463:2339:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:4278:2449\n",
- "SN279:493:C84L3ACXX:4:2309:4476:2354:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:4432:2416\n",
- "SN279:493:C84L3ACXX:4:2309:4432:2416:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:4452:2498\n",
- "SN279:493:C84L3ACXX:4:2309:4278:2449:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:4508:2251\n",
- "SN279:493:C84L3ACXX:4:2309:4426:2479:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:4426:2479\n",
- "SN279:493:C84L3ACXX:4:2309:4452:2498:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:4673:2350\n",
- "SN279:493:C84L3ACXX:4:2309:4561:2359:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:3896:2434\n",
- "SN279:493:C84L3ACXX:4:2309:4768:2286:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:4624:2278\n",
- "SN279:493:C84L3ACXX:4:2309:4920:2307:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:4884:2302\n",
- "SN279:493:C84L3ACXX:4:2309:4910:2446:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:4961:2404\n",
- "SN279:493:C84L3ACXX:4:2309:5482:2282:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:5358:2347\n",
- "SN279:493:C84L3ACXX:4:2309:5358:2347:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:5361:2301\n",
- "SN279:493:C84L3ACXX:4:2309:5371:2373:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:5307:2448\n",
- "SN279:493:C84L3ACXX:4:2309:5328:2408:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:5371:2373\n",
- "SN279:493:C84L3ACXX:4:2309:5284:2447:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:5686:2262\n",
- "SN279:493:C84L3ACXX:4:2309:5262:2474:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:5262:2474\n",
- "SN279:493:C84L3ACXX:4:2309:5682:2342:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:5596:2438\n",
- "SN279:493:C84L3ACXX:4:2309:5513:2407:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:5636:2354\n",
- "SN279:493:C84L3ACXX:4:2309:5596:2438:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:5877:2322\n",
- "SN279:493:C84L3ACXX:4:2309:5509:2457:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:5901:2307\n",
- "SN279:493:C84L3ACXX:4:2309:5855:2404:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:5960:2431\n",
- "SN279:493:C84L3ACXX:4:2309:5876:2461:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:5855:2404\n",
- "SN279:493:C84L3ACXX:4:2309:5972:2474:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:6012:2383\n",
- "SN279:493:C84L3ACXX:4:2309:6020:2318:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:6020:2318\n",
- "SN279:493:C84L3ACXX:4:2309:6012:2383:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:6185:2427\n",
- "SN279:493:C84L3ACXX:4:2309:6185:2427:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:6147:2451\n",
- "SN279:493:C84L3ACXX:4:2309:6062:2451:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:6176:2456\n",
- "SN279:493:C84L3ACXX:4:2309:6176:2456:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:6292:2269\n",
- "SN279:493:C84L3ACXX:4:2309:6097:2469:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:4993:2403\n",
- "SN279:493:C84L3ACXX:4:2309:6336:2280:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:6315:2280\n",
- "SN279:493:C84L3ACXX:4:2309:6292:2291:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:6355:2388\n",
- "SN279:493:C84L3ACXX:4:2309:6255:2308:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:6486:2357\n",
- "SN279:493:C84L3ACXX:4:2309:6479:2328:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:6336:2280\n",
- "SN279:493:C84L3ACXX:4:2309:6486:2357:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:6348:2439\n",
- "SN279:493:C84L3ACXX:4:2309:6480:2449:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:6692:2314\n",
- "SN279:493:C84L3ACXX:4:2309:6566:2297:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:6669:2392\n",
- "SN279:493:C84L3ACXX:4:2309:6589:2309:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:6625:2260\n",
- "SN279:493:C84L3ACXX:4:2309:6692:2314:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:6589:2309\n",
- "SN279:493:C84L3ACXX:4:2309:6531:2439:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:6890:2264\n",
- "SN279:493:C84L3ACXX:4:2309:6995:2320:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:6995:2320\n",
- "SN279:493:C84L3ACXX:4:2309:6787:2349:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:6632:2476\n",
- "SN279:493:C84L3ACXX:4:2309:6862:2360:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:6787:2421\n",
- "SN279:493:C84L3ACXX:4:2309:7468:2473:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:7468:2473\n",
- "SN279:493:C84L3ACXX:4:2309:7529:2264:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:7423:2358\n",
- "SN279:493:C84L3ACXX:4:2309:7711:2265:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:7694:2324\n",
- "SN279:493:C84L3ACXX:4:2309:7677:2365:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:7508:2289\n",
- "SN279:493:C84L3ACXX:4:2309:7534:2375:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:7646:2396\n",
- "SN279:493:C84L3ACXX:4:2309:7646:2396:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:7880:2364\n",
- "SN279:493:C84L3ACXX:4:2309:7521:2464:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:7823:2303\n",
- "SN279:493:C84L3ACXX:4:2309:7847:2282:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:7847:2282\n",
- "SN279:493:C84L3ACXX:4:2309:7967:2386:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:7948:2448\n",
- "SN279:493:C84L3ACXX:4:2309:7948:2448:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:7967:2386\n",
- "SN279:493:C84L3ACXX:4:2309:8000:2463:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:8136:2269\n",
- "SN279:493:C84L3ACXX:4:2309:8136:2269:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:8149:2381\n",
- "SN279:493:C84L3ACXX:4:2309:8149:2381:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:8033:2370\n",
- "SN279:493:C84L3ACXX:4:2309:8085:2451:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:8014:2490\n",
- "SN279:493:C84L3ACXX:4:2309:8394:2273:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:8394:2273\n",
- "SN279:493:C84L3ACXX:4:2309:8471:2318:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:8471:2318\n",
- "SN279:493:C84L3ACXX:4:2309:8447:2390:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:8510:2289\n",
- "SN279:493:C84L3ACXX:4:2309:8439:2484:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:8264:2495\n",
- "SN279:493:C84L3ACXX:4:2309:8264:2495:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:8439:2484\n",
- "SN279:493:C84L3ACXX:4:2309:8735:2345:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:8536:2415\n",
- "SN279:493:C84L3ACXX:4:2309:8620:2408:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:8577:2473\n",
- "SN279:493:C84L3ACXX:4:2309:8567:2410:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:8427:2424\n",
- "SN279:493:C84L3ACXX:4:2309:8638:2430:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:8760:2327\n",
- "SN279:493:C84L3ACXX:4:2309:8577:2473:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:8898:2339\n",
- "SN279:493:C84L3ACXX:4:2309:8760:2327:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:8818:2283\n",
- "SN279:493:C84L3ACXX:4:2309:8819:2493:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:9027:2282\n",
- "SN279:493:C84L3ACXX:4:2309:9238:2275:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:9127:2301\n",
- "SN279:493:C84L3ACXX:4:2309:9027:2282:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:9013:2303\n",
- "SN279:493:C84L3ACXX:4:2309:9156:2310:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:9237:2341\n",
- "SN279:493:C84L3ACXX:4:2309:9130:2319:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:9130:2319\n",
- "SN279:493:C84L3ACXX:4:2309:9081:2371:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:9173:2373\n",
- "SN279:493:C84L3ACXX:4:2309:9173:2373:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:9100:2381\n",
- "SN279:493:C84L3ACXX:4:2309:9100:2381:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:9039:2397\n",
- "SN279:493:C84L3ACXX:4:2309:9490:2299:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:9480:2396\n",
- "SN279:493:C84L3ACXX:4:2309:9270:2303:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:9003:2443\n",
- "SN279:493:C84L3ACXX:4:2309:9443:2340:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:9400:2437\n",
- "SN279:493:C84L3ACXX:4:2309:9400:2437:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:9336:2445\n",
- "SN279:493:C84L3ACXX:4:2309:9336:2445:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:9443:2340\n",
- "SN279:493:C84L3ACXX:4:2309:9441:2494:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:9627:2284\n",
- "SN279:493:C84L3ACXX:4:2309:9627:2284:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:9688:2305\n",
- "SN279:493:C84L3ACXX:4:2309:9607:2291:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:9512:2354\n",
- "SN279:493:C84L3ACXX:4:2309:9532:2370:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:9607:2291\n",
- "SN279:493:C84L3ACXX:4:2309:9589:2383:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:9532:2370\n",
- "SN279:493:C84L3ACXX:4:2309:9655:2465:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:9588:2462\n",
- "SN279:493:C84L3ACXX:4:2309:9680:2469:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:9680:2469\n",
- "SN279:493:C84L3ACXX:4:2309:9986:2295:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:9986:2295\n",
- "SN279:493:C84L3ACXX:4:2309:9794:2408:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:9948:2365\n",
- "SN279:493:C84L3ACXX:4:2309:9832:2478:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:10192:2300\n",
- "SN279:493:C84L3ACXX:4:2309:10248:2490:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:10188:2427\n",
- "SN279:493:C84L3ACXX:4:2309:10227:2493:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:10130:2363\n",
- "SN279:493:C84L3ACXX:4:2309:10378:2389:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:10336:2353\n",
- "SN279:493:C84L3ACXX:4:2309:10446:2393:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:10401:2426\n",
- "SN279:493:C84L3ACXX:4:2309:10414:2406:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:10414:2406\n",
- "SN279:493:C84L3ACXX:4:2309:10289:2447:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:10289:2447\n",
- "SN279:493:C84L3ACXX:4:2309:10380:2496:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:10501:2374\n",
- "SN279:493:C84L3ACXX:4:2309:10517:2272:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:10735:2417\n",
- "SN279:493:C84L3ACXX:4:2309:10676:2329:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:10540:2395\n",
- "SN279:493:C84L3ACXX:4:2309:10501:2374:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:10574:2424\n",
- "SN279:493:C84L3ACXX:4:2309:10735:2417:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:10528:2487\n",
- "SN279:493:C84L3ACXX:4:2309:10574:2424:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:10909:2301\n",
- "SN279:493:C84L3ACXX:4:2309:10528:2487:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:10697:2439\n",
- "SN279:493:C84L3ACXX:4:2309:10768:2256:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:10768:2256\n",
- "SN279:493:C84L3ACXX:4:2309:10879:2307:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:10879:2307\n",
- "SN279:493:C84L3ACXX:4:2309:10997:2371:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:10979:2350\n",
- "SN279:493:C84L3ACXX:4:2309:10834:2374:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:11056:2295\n",
- "SN279:493:C84L3ACXX:4:2309:10896:2389:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:11094:2372\n",
- "SN279:493:C84L3ACXX:4:2309:11056:2295:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:10305:2429\n",
- "SN279:493:C84L3ACXX:4:2309:11033:2442:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:11178:2301\n",
- "SN279:493:C84L3ACXX:4:2309:11366:2459:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:11300:2284\n",
- "SN279:493:C84L3ACXX:4:2309:11742:2264:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:11607:2354\n",
- "SN279:493:C84L3ACXX:4:2309:11625:2265:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:11726:2333\n",
- "SN279:493:C84L3ACXX:4:2309:11544:2315:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:11625:2265\n",
- "SN279:493:C84L3ACXX:4:2309:11726:2333:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:11517:2343\n",
- "SN279:493:C84L3ACXX:4:2309:11517:2343:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:11818:2310\n",
- "SN279:493:C84L3ACXX:4:2309:11867:2291:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:11867:2291\n",
- "SN279:493:C84L3ACXX:4:2309:11818:2310:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:11760:2438\n",
- "SN279:493:C84L3ACXX:4:2309:11829:2348:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:11883:2462\n",
- "SN279:493:C84L3ACXX:4:2309:11936:2381:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:11806:2448\n",
- "SN279:493:C84L3ACXX:4:2309:11904:2409:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:11936:2381\n",
- "SN279:493:C84L3ACXX:4:2309:11760:2438:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:11869:2444\n",
- "SN279:493:C84L3ACXX:4:2309:11806:2448:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:11915:2489\n",
- "SN279:493:C84L3ACXX:4:2309:11883:2462:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:12216:2293\n",
- "SN279:493:C84L3ACXX:4:2309:11915:2489:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:12055:2358\n",
- "SN279:493:C84L3ACXX:4:2309:12030:2338:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:12030:2338\n",
- "SN279:493:C84L3ACXX:4:2309:12055:2358:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:12139:2392\n",
- "SN279:493:C84L3ACXX:4:2309:12180:2383:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:12083:2378\n",
- "SN279:493:C84L3ACXX:4:2309:12219:2413:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:12196:2436\n",
- "SN279:493:C84L3ACXX:4:2309:12196:2436:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:12355:2309\n",
- "SN279:493:C84L3ACXX:4:2309:12242:2464:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:12327:2370\n",
- "SN279:493:C84L3ACXX:4:2309:12130:2489:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:12242:2464\n",
- "SN279:493:C84L3ACXX:4:2309:12355:2309:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:12278:2327\n",
- "SN279:493:C84L3ACXX:4:2309:12278:2327:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:12329:2391\n",
- "SN279:493:C84L3ACXX:4:2309:12321:2410:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:5513:2407\n",
- "SN279:493:C84L3ACXX:4:2309:12363:2418:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:12364:2392\n",
- "SN279:493:C84L3ACXX:4:2309:12282:2418:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:12495:2399\n",
- "SN279:493:C84L3ACXX:4:2309:12304:2469:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:12646:2314\n",
- "SN279:493:C84L3ACXX:4:2309:12625:2252:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:12603:2351\n",
- "SN279:493:C84L3ACXX:4:2309:12708:2269:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:12572:2265\n",
- "SN279:493:C84L3ACXX:4:2309:12646:2314:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:12708:2269\n",
- "SN279:493:C84L3ACXX:4:2309:12578:2326:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:12630:2364\n",
- "SN279:493:C84L3ACXX:4:2309:12630:2364:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:12541:2411\n",
- "SN279:493:C84L3ACXX:4:2309:12541:2411:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:12683:2421\n",
- "SN279:493:C84L3ACXX:4:2309:12683:2421:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:12504:2450\n",
- "SN279:493:C84L3ACXX:4:2309:12832:2283:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:12929:2337\n",
- "SN279:493:C84L3ACXX:4:2309:12757:2292:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:12743:2471\n",
- "SN279:493:C84L3ACXX:4:2309:12752:2321:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:12917:2375\n",
- "SN279:493:C84L3ACXX:4:2309:12929:2337:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:13000:2405\n",
- "SN279:493:C84L3ACXX:4:2309:13009:2275:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:13201:2304\n",
- "SN279:493:C84L3ACXX:4:2309:13201:2304:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:11677:2446\n",
- "SN279:493:C84L3ACXX:4:2309:13066:2383:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:12916:2414\n",
- "SN279:493:C84L3ACXX:4:2309:13146:2387:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:13100:2427\n",
- "SN279:493:C84L3ACXX:4:2309:13249:2474:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:13146:2387\n",
- "SN279:493:C84L3ACXX:4:2309:13461:2270:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:13374:2377\n",
- "SN279:493:C84L3ACXX:4:2309:13408:2363:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:13408:2363\n",
- "SN279:493:C84L3ACXX:4:2309:13374:2377:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:13329:2456\n",
- "SN279:493:C84L3ACXX:4:2309:13482:2401:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:13482:2401\n",
- "SN279:493:C84L3ACXX:4:2309:13329:2456:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:13253:2438\n",
- "SN279:493:C84L3ACXX:4:2309:13271:2464:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:13271:2464\n",
- "SN279:493:C84L3ACXX:4:2309:13350:2468:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:13350:2468\n",
- "SN279:493:C84L3ACXX:4:2309:13673:2315:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:13588:2347\n",
- "SN279:493:C84L3ACXX:4:2309:13581:2361:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:13581:2361\n",
- "SN279:493:C84L3ACXX:4:2309:13627:2422:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:13066:2383\n",
- "SN279:493:C84L3ACXX:4:2309:13796:2300:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:13673:2315\n",
- "SN279:493:C84L3ACXX:4:2309:13973:2326:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:13714:2463\n",
- "SN279:493:C84L3ACXX:4:2309:13886:2343:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:13973:2326\n",
- "SN279:493:C84L3ACXX:4:2309:13902:2359:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:13902:2359\n",
- "SN279:493:C84L3ACXX:4:2309:13834:2477:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:13965:2371\n",
- "SN279:493:C84L3ACXX:4:2309:14150:2271:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:13758:2491\n",
- "SN279:493:C84L3ACXX:4:2309:14176:2274:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:14177:2295\n",
- "SN279:493:C84L3ACXX:4:2309:14177:2295:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:13918:2483\n",
- "SN279:493:C84L3ACXX:4:2309:14169:2340:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:14169:2340\n",
- "SN279:493:C84L3ACXX:4:2309:14024:2354:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:14106:2381\n",
- "SN279:493:C84L3ACXX:4:2309:14116:2404:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:14024:2354\n",
- "SN279:493:C84L3ACXX:4:2309:14168:2481:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:14096:2407\n",
- "SN279:493:C84L3ACXX:4:2309:14091:2490:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:14029:2418\n",
- "SN279:493:C84L3ACXX:4:2309:14447:2252:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:14449:2470\n",
- "SN279:493:C84L3ACXX:4:2309:14509:2291:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:14447:2252\n",
- "SN279:493:C84L3ACXX:4:2309:14625:2350:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:14738:2412\n",
- "SN279:493:C84L3ACXX:4:2309:14683:2432:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:14519:2423\n",
- "SN279:493:C84L3ACXX:4:2309:14599:2483:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:14509:2291\n",
- "SN279:493:C84L3ACXX:4:2309:14888:2252:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:14888:2252\n",
- "SN279:493:C84L3ACXX:4:2309:14799:2313:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:14966:2303\n",
- "SN279:493:C84L3ACXX:4:2309:14940:2331:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:14829:2353\n",
- "SN279:493:C84L3ACXX:4:2309:14758:2355:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:14889:2292\n",
- "SN279:493:C84L3ACXX:4:2309:14756:2453:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:15169:2256\n",
- "SN279:493:C84L3ACXX:4:2309:15216:2280:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:15141:2270\n",
- "SN279:493:C84L3ACXX:4:2309:15110:2308:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:14940:2331\n",
- "SN279:493:C84L3ACXX:4:2309:15478:2268:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:15251:2302\n",
- "SN279:493:C84L3ACXX:4:2309:15401:2360:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:15457:2346\n",
- "SN279:493:C84L3ACXX:4:2309:15288:2405:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:15549:2317\n",
- "SN279:493:C84L3ACXX:4:2309:15613:2344:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:15613:2344\n",
- "SN279:493:C84L3ACXX:4:2309:15714:2357:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:15655:2307\n",
- "SN279:493:C84L3ACXX:4:2309:15574:2363:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:15694:2378\n",
- "SN279:493:C84L3ACXX:4:2309:15602:2442:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:15857:2285\n",
- "SN279:493:C84L3ACXX:4:2309:15948:2265:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:15925:2356\n",
- "SN279:493:C84L3ACXX:4:2309:15768:2344:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:15602:2442\n",
- "SN279:493:C84L3ACXX:4:2309:15901:2405:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:15948:2361\n",
- "SN279:493:C84L3ACXX:4:2309:16213:2258:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:15768:2344\n",
- "SN279:493:C84L3ACXX:4:2309:16042:2263:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:16171:2275\n",
- "SN279:493:C84L3ACXX:4:2309:16108:2461:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:16245:2453\n",
- "SN279:493:C84L3ACXX:4:2309:16406:2360:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:16108:2461\n",
- "SN279:493:C84L3ACXX:4:2309:16622:2367:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:16263:2490\n",
- "SN279:493:C84L3ACXX:4:2309:16777:2259:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:16372:2301\n",
- "SN279:493:C84L3ACXX:4:2309:16754:2304:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:16754:2304\n",
- "SN279:493:C84L3ACXX:4:2309:16873:2330:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:16873:2330\n",
- "SN279:493:C84L3ACXX:4:2309:16835:2333:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:16904:2400\n",
- "SN279:493:C84L3ACXX:4:2309:16783:2481:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:16955:2444\n",
- "SN279:493:C84L3ACXX:4:2309:17165:2373:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:16917:2451\n",
- "SN279:493:C84L3ACXX:4:2309:17112:2414:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:17007:2339\n",
- "SN279:493:C84L3ACXX:4:2309:17018:2457:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:17216:2430\n",
- "SN279:493:C84L3ACXX:4:2309:17284:2330:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:17598:2273\n",
- "SN279:493:C84L3ACXX:4:2309:17281:2423:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:17318:2364\n",
- "SN279:493:C84L3ACXX:4:2309:17348:2491:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:17448:2296\n",
- "SN279:493:C84L3ACXX:4:2309:17682:2288:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:17348:2491\n",
- "SN279:493:C84L3ACXX:4:2309:17594:2334:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:17682:2288\n",
- "SN279:493:C84L3ACXX:4:2309:17727:2385:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:17723:2434\n",
- "SN279:493:C84L3ACXX:4:2309:17894:2341:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:17893:2378\n",
- "SN279:493:C84L3ACXX:4:2309:17893:2378:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:17752:2344\n",
- "SN279:493:C84L3ACXX:4:2309:17789:2414:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:17894:2341\n",
- "SN279:493:C84L3ACXX:4:2309:18195:2348:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:17840:2466\n",
- "SN279:493:C84L3ACXX:4:2309:18216:2392:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:18187:2423\n",
- "SN279:493:C84L3ACXX:4:2309:18020:2422:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:18395:2275\n",
- "SN279:493:C84L3ACXX:4:2309:18187:2423:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:18020:2422\n",
- "SN279:493:C84L3ACXX:4:2309:18332:2282:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:18345:2325\n",
- "SN279:493:C84L3ACXX:4:2309:18345:2325:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:18410:2378\n",
- "SN279:493:C84L3ACXX:4:2309:18371:2386:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:18332:2282\n",
- "SN279:493:C84L3ACXX:4:2309:18445:2408:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:18652:2274\n",
- "SN279:493:C84L3ACXX:4:2309:18632:2328:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:18336:2409\n",
- "SN279:493:C84L3ACXX:4:2309:18660:2447:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:18614:2495\n",
- "SN279:493:C84L3ACXX:4:2309:18614:2495:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:18684:2500\n",
- "SN279:493:C84L3ACXX:4:2309:18992:2386:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:18861:2388\n",
- "SN279:493:C84L3ACXX:4:2309:18968:2393:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:18760:2418\n",
- "SN279:493:C84L3ACXX:4:2309:18947:2397:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:18992:2386\n",
- "SN279:493:C84L3ACXX:4:2309:18760:2418:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:19044:2283\n",
- "SN279:493:C84L3ACXX:4:2309:19158:2257:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:19104:2325\n",
- "SN279:493:C84L3ACXX:4:2309:19044:2283:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:18990:2470\n",
- "SN279:493:C84L3ACXX:4:2309:19062:2362:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:19062:2362\n",
- "SN279:493:C84L3ACXX:4:2309:19184:2416:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:19206:2432\n",
- "SN279:493:C84L3ACXX:4:2309:19246:2423:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:19184:2416\n",
- "SN279:493:C84L3ACXX:4:2309:19118:2431:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:19416:2266\n",
- "SN279:493:C84L3ACXX:4:2309:19206:2432:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:19082:2437\n",
- "SN279:493:C84L3ACXX:4:2309:19255:2293:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:19255:2293\n",
- "SN279:493:C84L3ACXX:4:2309:19273:2325:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:19337:2395\n",
- "SN279:493:C84L3ACXX:4:2309:19378:2402:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:19458:2464\n",
- "SN279:493:C84L3ACXX:4:2309:19414:2488:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:19338:2432\n",
- "SN279:493:C84L3ACXX:4:2309:19729:2403:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:19414:2488\n",
- "SN279:493:C84L3ACXX:4:2309:19553:2469:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:19781:2257\n",
- "SN279:493:C84L3ACXX:4:2309:19891:2305:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:19926:2424\n",
- "SN279:493:C84L3ACXX:4:2309:19864:2486:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:20203:2348\n",
- "SN279:493:C84L3ACXX:4:2309:20023:2341:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:19975:2363\n",
- "SN279:493:C84L3ACXX:4:2309:20203:2348:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:20176:2369\n",
- "SN279:493:C84L3ACXX:4:2309:20008:2356:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:20082:2398\n",
- "SN279:493:C84L3ACXX:4:2309:20176:2369:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:20014:2453\n",
- "SN279:493:C84L3ACXX:4:2309:20082:2398:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:20366:2332\n",
- "SN279:493:C84L3ACXX:4:2309:20014:2453:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:20110:2437\n",
- "SN279:493:C84L3ACXX:4:2309:20321:2362:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:20439:2372\n",
- "SN279:493:C84L3ACXX:4:2309:20418:2461:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:20350:2263\n",
- "SN279:493:C84L3ACXX:4:2309:20357:2475:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:20428:2484\n",
- "SN279:493:C84L3ACXX:4:2309:20586:2274:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:20336:2498\n",
- "SN279:493:C84L3ACXX:4:2309:20605:2429:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:20462:2498\n",
- "SN279:493:C84L3ACXX:4:2309:20545:2463:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:20605:2429\n",
- "SN279:493:C84L3ACXX:4:2309:20930:2366:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:20898:2337\n",
- "SN279:493:C84L3ACXX:4:2309:20986:2424:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:21025:2458\n",
- "SN279:493:C84L3ACXX:4:2309:21194:2251:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:21197:2473\n",
- "SN279:493:C84L3ACXX:4:2309:21128:2450:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:20986:2424\n",
- "SN279:493:C84L3ACXX:4:2309:21025:2458:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:21194:2251\n",
- "SN279:493:C84L3ACXX:4:2309:21314:2276:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:21318:2379\n",
- "SN279:493:C84L3ACXX:4:2309:1122:2521:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:1122:2521\n",
- "SN279:493:C84L3ACXX:4:2309:1172:2554:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:1138:2559\n",
- "SN279:493:C84L3ACXX:4:2309:1159:2579:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:1172:2554\n",
- "SN279:493:C84L3ACXX:4:2309:1217:2591:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:1180:2728\n",
- "SN279:493:C84L3ACXX:4:2309:1180:2728:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:1198:2745\n",
- "SN279:493:C84L3ACXX:4:2309:1458:2529:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:1162:2742\n",
- "SN279:493:C84L3ACXX:4:2309:1439:2602:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:1283:2548\n",
- "SN279:493:C84L3ACXX:4:2309:1253:2668:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:1273:2622\n",
- "SN279:493:C84L3ACXX:4:2309:1703:2532:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:1703:2532\n",
- "SN279:493:C84L3ACXX:4:2309:1551:2571:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:1253:2668\n",
- "SN279:493:C84L3ACXX:4:2309:1512:2655:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:19525:2484\n",
- "SN279:493:C84L3ACXX:4:2309:1821:2511:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:1625:2655\n",
- "SN279:493:C84L3ACXX:4:2309:2105:2568:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:2151:2606\n",
- "SN279:493:C84L3ACXX:4:2309:2151:2606:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:2022:2624\n",
- "SN279:493:C84L3ACXX:4:2309:2022:2624:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:1512:2655\n",
- "SN279:493:C84L3ACXX:4:2309:2010:2644:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:2010:2644\n",
- "SN279:493:C84L3ACXX:4:2309:2340:2507:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:2280:2543\n",
- "SN279:493:C84L3ACXX:4:2309:2307:2538:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:2359:2572\n",
- "SN279:493:C84L3ACXX:4:2309:2280:2543:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:2340:2507\n",
- "SN279:493:C84L3ACXX:4:2309:2273:2678:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:2394:2710\n",
- "SN279:493:C84L3ACXX:4:2309:2394:2710:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:2273:2678\n",
- "SN279:493:C84L3ACXX:4:2309:2685:2502:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:2479:2738\n",
- "SN279:493:C84L3ACXX:4:2309:2654:2517:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:2654:2517\n",
- "SN279:493:C84L3ACXX:4:2309:2525:2711:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:2506:2731\n",
- "SN279:493:C84L3ACXX:4:2309:2865:2608:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:2972:2509\n",
- "SN279:493:C84L3ACXX:4:2309:2916:2620:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:2520:2630\n",
- "SN279:493:C84L3ACXX:4:2309:2822:2632:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:2808:2572\n",
- "SN279:493:C84L3ACXX:4:2309:2774:2658:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:2917:2641\n",
- "SN279:493:C84L3ACXX:4:2309:2937:2699:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:2774:2658\n",
- "SN279:493:C84L3ACXX:4:2309:2795:2739:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:2909:2714\n",
- "SN279:493:C84L3ACXX:4:2309:3155:2521:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:3136:2534\n",
- "SN279:493:C84L3ACXX:4:2309:3170:2547:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:3033:2509\n",
- "SN279:493:C84L3ACXX:4:2309:3148:2553:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:3053:2590\n",
- "SN279:493:C84L3ACXX:4:2309:3053:2590:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:3181:2623\n",
- "SN279:493:C84L3ACXX:4:2309:3083:2611:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:3474:2553\n",
- "SN279:493:C84L3ACXX:4:2309:3119:2650:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:3190:2711\n",
- "SN279:493:C84L3ACXX:4:2309:3190:2711:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:3119:2650\n",
- "SN279:493:C84L3ACXX:4:2309:3299:2530:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:3299:2530\n",
- "SN279:493:C84L3ACXX:4:2309:3431:2706:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:3504:2573\n",
- "SN279:493:C84L3ACXX:4:2309:3708:2639:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:3704:2508\n",
- "SN279:493:C84L3ACXX:4:2309:3583:2681:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:3631:2692\n",
- "SN279:493:C84L3ACXX:4:2309:3674:2694:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:3667:2583\n",
- "SN279:493:C84L3ACXX:4:2309:3549:2742:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:3964:2541\n",
- "SN279:493:C84L3ACXX:4:2309:3688:2743:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:3831:2524\n",
- "SN279:493:C84L3ACXX:4:2309:3831:2524:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:3549:2742\n",
- "SN279:493:C84L3ACXX:4:2309:3964:2541:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:3953:2564\n",
- "SN279:493:C84L3ACXX:4:2309:3953:2564:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:3775:2621\n",
- "SN279:493:C84L3ACXX:4:2309:3777:2721:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:3933:2583\n",
- "SN279:493:C84L3ACXX:4:2309:4122:2607:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:3864:2733\n",
- "SN279:493:C84L3ACXX:4:2309:4071:2697:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:3793:2707\n",
- "SN279:493:C84L3ACXX:4:2309:4273:2503:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:4291:2506\n",
- "SN279:493:C84L3ACXX:4:2309:4273:2579:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:4426:2593\n",
- "SN279:493:C84L3ACXX:4:2309:4253:2615:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:4273:2579\n",
- "SN279:493:C84L3ACXX:4:2309:4276:2652:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:4443:2564\n",
- "SN279:493:C84L3ACXX:4:2309:4404:2715:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:4740:2620\n",
- "SN279:493:C84L3ACXX:4:2309:4614:2608:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:4709:2667\n",
- "SN279:493:C84L3ACXX:4:2309:4740:2620:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:4404:2715\n",
- "SN279:493:C84L3ACXX:4:2309:4555:2703:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:4717:2728\n",
- "SN279:493:C84L3ACXX:4:2309:4717:2728:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:4555:2703\n",
- "SN279:493:C84L3ACXX:4:2309:4521:2734:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:4521:2734\n",
- "SN279:493:C84L3ACXX:4:2309:4818:2514:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:4898:2566\n",
- "SN279:493:C84L3ACXX:4:2309:4784:2602:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:4831:2616\n",
- "SN279:493:C84L3ACXX:4:2309:5110:2675:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:4784:2602\n",
- "SN279:493:C84L3ACXX:4:2309:5205:2692:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:5205:2692\n",
- "SN279:493:C84L3ACXX:4:2309:5033:2725:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:5237:2750\n",
- "SN279:493:C84L3ACXX:4:2309:5237:2750:\t4\n",
- "SN279:493:C84L3ACXX:4:2309:5033:2725\n",
- "SN279:493:C84L3ACXX:4:2309:5270:2523:\t4\n"
+ "ID: SN279:493:C84L3ACXX:4:2309:1272:2215\n",
+ "Name: SN279:493:C84L3ACXX:4:2309:1272:2215\n",
+ "Description: SN279:493:C84L3ACXX:4:2309:1272:2215 1:N:0:CAGATC\n",
+ "Number of features: 0\n",
+ "Per letter annotation for: phred_quality\n",
+ "Seq('NGAGGACCGAACCGACTTACGTT', SingleLetterAlphabet())\n"
+ ]
+ },
+ {
+ "ename": "NameError",
+ "evalue": "name 'pprint' is not defined",
+ "output_type": "error",
+ "traceback": [
+ "\u001b[1;31m---------------------------------------------------------------------------\u001b[0m",
+ "\u001b[1;31mNameError\u001b[0m Traceback (most recent call last)",
+ "\u001b[1;32m<ipython-input-262-737603416198>\u001b[0m in \u001b[0;36m<module>\u001b[1;34m()\u001b[0m\n\u001b[0;32m 22\u001b[0m \u001b[0mprint\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mrecord\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m 23\u001b[0m \u001b[0marr\u001b[0m \u001b[1;33m=\u001b[0m \u001b[0mmatches\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mreadline\u001b[0m\u001b[1;33m(\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0msplit\u001b[0m\u001b[1;33m(\u001b[0m\u001b[1;34m'\\t'\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[1;32m---> 24\u001b[1;33m \u001b[0mpprint\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0marr\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0m\u001b[0;32m 25\u001b[0m \u001b[1;32mbreak\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m 26\u001b[0m \u001b[0mseq_id\u001b[0m \u001b[1;33m=\u001b[0m \u001b[0marr\u001b[0m\u001b[1;33m[\u001b[0m\u001b[1;36m0\u001b[0m\u001b[1;33m]\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n",
+ "\u001b[1;31mNameError\u001b[0m: name 'pprint' is not defined"
]
}
],
@@ -1615,7 +745,10 @@
" seqiter = []\n",
" \n",
" for record in filt_iter:\n",
+ " print(record)\n",
" arr = matches.readline().split('\\t')\n",
+ " pprint(arr)\n",
+ " break\n",
" seq_id = arr[0]\n",
" flag = arr[1]\n",
" if(flag=='4'):\n",
--
GitLab