diff --git a/ProcessFASTQ.ipynb b/ProcessFASTQ.ipynb index d62c0d53fb6158da7e3da3e97199e3eb0a200a0e..2cab567fd48aeaec415625bd23d25ff9c0aef113 100644 --- a/ProcessFASTQ.ipynb +++ b/ProcessFASTQ.ipynb @@ -550,7 +550,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 104, "metadata": { "collapsed": false }, @@ -598,12 +598,28 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 105, "metadata": { "collapsed": false, "scrolled": false }, - "outputs": [], + "outputs": [ + { + "name": "stderr", + "output_type": "stream", + "text": [ + "Time loading forward index: 00:00:00\n", + "Time loading mirror index: 00:00:00\n", + "End-to-end 2/3-mismatch full-index search: 00:02:59\n", + "# reads processed: 31626224\n", + "# reads with at least one reported alignment: 22981667 (72.67%)\n", + "# reads that failed to align: 8644557 (27.33%)\n", + "Reported 22981667 alignments to 1 output stream(s)\n", + "Time searching: 00:02:59\n", + "Overall time: 00:02:59\n" + ] + } + ], "source": [ "%%bash\n", "source ./source\n",