From d330b168b14fcaa4a4db774609ed7473d3c2cba3 Mon Sep 17 00:00:00 2001
From: Julien Cornut <julien.cornut@hesge.ch>
Date: Thu, 25 Feb 2016 09:09:01 +0100
Subject: [PATCH] Automatic Update
---
ProcessFASTQ.ipynb | 22 +++++++++++++++++++---
1 file changed, 19 insertions(+), 3 deletions(-)
diff --git a/ProcessFASTQ.ipynb b/ProcessFASTQ.ipynb
index d62c0d5..2cab567 100644
--- a/ProcessFASTQ.ipynb
+++ b/ProcessFASTQ.ipynb
@@ -550,7 +550,7 @@
},
{
"cell_type": "code",
- "execution_count": null,
+ "execution_count": 104,
"metadata": {
"collapsed": false
},
@@ -598,12 +598,28 @@
},
{
"cell_type": "code",
- "execution_count": null,
+ "execution_count": 105,
"metadata": {
"collapsed": false,
"scrolled": false
},
- "outputs": [],
+ "outputs": [
+ {
+ "name": "stderr",
+ "output_type": "stream",
+ "text": [
+ "Time loading forward index: 00:00:00\n",
+ "Time loading mirror index: 00:00:00\n",
+ "End-to-end 2/3-mismatch full-index search: 00:02:59\n",
+ "# reads processed: 31626224\n",
+ "# reads with at least one reported alignment: 22981667 (72.67%)\n",
+ "# reads that failed to align: 8644557 (27.33%)\n",
+ "Reported 22981667 alignments to 1 output stream(s)\n",
+ "Time searching: 00:02:59\n",
+ "Overall time: 00:02:59\n"
+ ]
+ }
+ ],
"source": [
"%%bash\n",
"source ./source\n",
--
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