From deafba183ce1cd55448904447fb93151b4dbdf2f Mon Sep 17 00:00:00 2001
From: Julien Cornut <julien.cornut@hesge.ch>
Date: Fri, 26 Feb 2016 12:08:01 +0100
Subject: [PATCH] Automatic Update
---
ProcessFASTQ.ipynb | 8 ++++++--
1 file changed, 6 insertions(+), 2 deletions(-)
diff --git a/ProcessFASTQ.ipynb b/ProcessFASTQ.ipynb
index 3943225..7a78e1c 100644
--- a/ProcessFASTQ.ipynb
+++ b/ProcessFASTQ.ipynb
@@ -683,7 +683,7 @@
},
{
"cell_type": "code",
- "execution_count": 240,
+ "execution_count": 242,
"metadata": {
"collapsed": false
},
@@ -722,7 +722,11 @@
" #sub_iter = (rec for rec in filt_iter \\\n",
" # if matches.readline().split('\\t')[1] == '4')\n",
" \n",
- " \n",
+ " for record in filt_iter:\n",
+ " arr = matches.readline().split('\\t')\n",
+ " seq_id = arr[0]\n",
+ " flag_field = arr[1]\n",
+ " \n",
"\n",
" # Write back fastq\n",
" SeqIO.write(sub_iter,substracted,\"fastq\")"
--
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