diff --git a/ProcessFASTQ.ipynb b/ProcessFASTQ.ipynb
index be7a0d780b06a0708f504ba3a5d2e7362e068b08..a180ebfdc7327590e927d5a6eb6ea9e34083e933 100644
--- a/ProcessFASTQ.ipynb
+++ b/ProcessFASTQ.ipynb
@@ -358,7 +358,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": null,
+   "execution_count": 95,
    "metadata": {
     "collapsed": false
    },
@@ -370,11 +370,21 @@
   },
   {
    "cell_type": "code",
-   "execution_count": null,
+   "execution_count": 96,
    "metadata": {
     "collapsed": false
    },
-   "outputs": [],
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "This is cutadapt 1.9.1 with Python 3.5.1\n",
+      "Command line parameters: -a CTGTAGGCACCATCAATAGATCGGAA -o 1-Cutadapted/flowcell384_lane7_pair1_ACTTGA.fastq.gz --quiet flowcell384_lane7_pair1_ACTTGA.fastq.gz\n",
+      "Trimming 1 adapter with at most 10.0% errors in single-end mode ...\n"
+     ]
+    }
+   ],
    "source": [
     "%%bash\n",
     "source ./source\n",
@@ -392,11 +402,19 @@
   },
   {
    "cell_type": "code",
-   "execution_count": null,
+   "execution_count": 97,
    "metadata": {
     "collapsed": false
    },
-   "outputs": [],
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Cutadapt run time : 0:26:27.423115\n"
+     ]
+    }
+   ],
    "source": [
     "# Store current time\n",
     "after = datetime.datetime.now()\n",
@@ -409,7 +427,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": null,
+   "execution_count": 98,
    "metadata": {
     "collapsed": true
    },
@@ -430,7 +448,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": null,
+   "execution_count": 99,
    "metadata": {
     "collapsed": false
    },
@@ -442,7 +460,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": null,
+   "execution_count": 100,
    "metadata": {
     "collapsed": false
    },
@@ -457,11 +475,19 @@
   },
   {
    "cell_type": "code",
-   "execution_count": null,
+   "execution_count": 101,
    "metadata": {
     "collapsed": false
    },
-   "outputs": [],
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Zcat run time : 0:00:26.676984\n"
+     ]
+    }
+   ],
    "source": [
     "# Store current time\n",
     "after = datetime.datetime.now()\n",