From f0e0946ed010cbc4b080fc5e502139841eda18e2 Mon Sep 17 00:00:00 2001
From: Julien Cornut <julien.cornut@hesge.ch>
Date: Thu, 25 Feb 2016 08:43:01 +0100
Subject: [PATCH] Automatic Update
---
ProcessFASTQ.ipynb | 46 ++++++++++++++++++++++++++++++++++++----------
1 file changed, 36 insertions(+), 10 deletions(-)
diff --git a/ProcessFASTQ.ipynb b/ProcessFASTQ.ipynb
index be7a0d7..a180ebf 100644
--- a/ProcessFASTQ.ipynb
+++ b/ProcessFASTQ.ipynb
@@ -358,7 +358,7 @@
},
{
"cell_type": "code",
- "execution_count": null,
+ "execution_count": 95,
"metadata": {
"collapsed": false
},
@@ -370,11 +370,21 @@
},
{
"cell_type": "code",
- "execution_count": null,
+ "execution_count": 96,
"metadata": {
"collapsed": false
},
- "outputs": [],
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "This is cutadapt 1.9.1 with Python 3.5.1\n",
+ "Command line parameters: -a CTGTAGGCACCATCAATAGATCGGAA -o 1-Cutadapted/flowcell384_lane7_pair1_ACTTGA.fastq.gz --quiet flowcell384_lane7_pair1_ACTTGA.fastq.gz\n",
+ "Trimming 1 adapter with at most 10.0% errors in single-end mode ...\n"
+ ]
+ }
+ ],
"source": [
"%%bash\n",
"source ./source\n",
@@ -392,11 +402,19 @@
},
{
"cell_type": "code",
- "execution_count": null,
+ "execution_count": 97,
"metadata": {
"collapsed": false
},
- "outputs": [],
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "Cutadapt run time : 0:26:27.423115\n"
+ ]
+ }
+ ],
"source": [
"# Store current time\n",
"after = datetime.datetime.now()\n",
@@ -409,7 +427,7 @@
},
{
"cell_type": "code",
- "execution_count": null,
+ "execution_count": 98,
"metadata": {
"collapsed": true
},
@@ -430,7 +448,7 @@
},
{
"cell_type": "code",
- "execution_count": null,
+ "execution_count": 99,
"metadata": {
"collapsed": false
},
@@ -442,7 +460,7 @@
},
{
"cell_type": "code",
- "execution_count": null,
+ "execution_count": 100,
"metadata": {
"collapsed": false
},
@@ -457,11 +475,19 @@
},
{
"cell_type": "code",
- "execution_count": null,
+ "execution_count": 101,
"metadata": {
"collapsed": false
},
- "outputs": [],
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "Zcat run time : 0:00:26.676984\n"
+ ]
+ }
+ ],
"source": [
"# Store current time\n",
"after = datetime.datetime.now()\n",
--
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