diff --git a/ProcessFASTQ.ipynb b/ProcessFASTQ.ipynb index f3d5d8842cd5015a6d1f61fd2c78e9b93b66fa77..c6a0225a76f30ee9d279ad3b48aebb2c6daf972d 100644 --- a/ProcessFASTQ.ipynb +++ b/ProcessFASTQ.ipynb @@ -95,35 +95,11 @@ }, { "cell_type": "code", - "execution_count": 165, + "execution_count": null, "metadata": { "collapsed": false }, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "\n", - "Available files :\n", - "\n", - "Undetermined_lane7_pair1\n", - "flowcell261_lane8_pair1_CAGATC \t\t Processsed\n", - "flowcell261_lane8_pair1_TGACCA \t\t Processsed\n", - "flowcell362_lane4_pair1_ACAGTG \t\t Processsed\n", - "flowcell362_lane4_pair1_ACTTGA \t\t Processsed\n", - "flowcell362_lane4_pair1_CAGATC \t\t Processsed\n", - "flowcell362_lane4_pair1_TGACCA \t\t Processsed\n", - "flowcell362_lane4_pair1_Undetermined\n", - "flowcell384_lane7_pair1_ACAGTG \t\t Processsed\n", - "flowcell384_lane7_pair1_ACTTGA \t\t Processsed\n", - "flowcell384_lane7_pair1_CAGATC \t\t Processsed\n", - "flowcell384_lane7_pair1_GATCAG \t\t Processsed\n", - "flowcell384_lane7_pair1_TGACCA\n", - "testing\n" - ] - } - ], + "outputs": [], "source": [ "# This lib is needed to parse fastq easily\n", "from Bio import SeqIO\n", diff --git a/source b/source index e08e1b2d24e1c252e0f44f9c1f1a7f1c61e4957a..c2e56a03c6333466111dbd31a8831e2fd001e166 100644 --- a/source +++ b/source @@ -1 +1 @@ -export FILENAME=flowcell384_lane7_pair1_TGACCA \ No newline at end of file +export FILENAME=flowcell362_lane4_pair1_Undetermined \ No newline at end of file