From f9805cc70ee4cb9a6d34b72d2ec6e7066809b6d2 Mon Sep 17 00:00:00 2001
From: Julien Cornut <julien.cornut@hesge.ch>
Date: Thu, 25 Feb 2016 18:46:02 +0100
Subject: [PATCH] Automatic Update
---
ProcessFASTQ.ipynb | 28 ++--------------------------
source | 2 +-
2 files changed, 3 insertions(+), 27 deletions(-)
diff --git a/ProcessFASTQ.ipynb b/ProcessFASTQ.ipynb
index f3d5d88..c6a0225 100644
--- a/ProcessFASTQ.ipynb
+++ b/ProcessFASTQ.ipynb
@@ -95,35 +95,11 @@
},
{
"cell_type": "code",
- "execution_count": 165,
+ "execution_count": null,
"metadata": {
"collapsed": false
},
- "outputs": [
- {
- "name": "stdout",
- "output_type": "stream",
- "text": [
- "\n",
- "Available files :\n",
- "\n",
- "Undetermined_lane7_pair1\n",
- "flowcell261_lane8_pair1_CAGATC \t\t Processsed\n",
- "flowcell261_lane8_pair1_TGACCA \t\t Processsed\n",
- "flowcell362_lane4_pair1_ACAGTG \t\t Processsed\n",
- "flowcell362_lane4_pair1_ACTTGA \t\t Processsed\n",
- "flowcell362_lane4_pair1_CAGATC \t\t Processsed\n",
- "flowcell362_lane4_pair1_TGACCA \t\t Processsed\n",
- "flowcell362_lane4_pair1_Undetermined\n",
- "flowcell384_lane7_pair1_ACAGTG \t\t Processsed\n",
- "flowcell384_lane7_pair1_ACTTGA \t\t Processsed\n",
- "flowcell384_lane7_pair1_CAGATC \t\t Processsed\n",
- "flowcell384_lane7_pair1_GATCAG \t\t Processsed\n",
- "flowcell384_lane7_pair1_TGACCA\n",
- "testing\n"
- ]
- }
- ],
+ "outputs": [],
"source": [
"# This lib is needed to parse fastq easily\n",
"from Bio import SeqIO\n",
diff --git a/source b/source
index e08e1b2..c2e56a0 100644
--- a/source
+++ b/source
@@ -1 +1 @@
-export FILENAME=flowcell384_lane7_pair1_TGACCA
\ No newline at end of file
+export FILENAME=flowcell362_lane4_pair1_Undetermined
\ No newline at end of file
--
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