diff --git a/ProcessFASTQ.ipynb b/ProcessFASTQ.ipynb index e6c03651504773c16df7b5419bd11a973119175e..75e41e2f410c9a11e852942e4a350818de6b8a54 100644 --- a/ProcessFASTQ.ipynb +++ b/ProcessFASTQ.ipynb @@ -671,6 +671,28 @@ " " ] }, + { + "cell_type": "code", + "execution_count": 274, + "metadata": { + "collapsed": false + }, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "28\tNM:i:0\n" + ] + } + ], + "source": [ + "%%bash \n", + "source ./source\n", + "\n", + "sed -n 415,420p 4-Bowtied/$FILENAME.sam | hean" + ] + }, { "cell_type": "code", "execution_count": 239,