From fcfe201132d73912664999893e03c42b0770c693 Mon Sep 17 00:00:00 2001
From: Julien Cornut <julien.cornut@hesge.ch>
Date: Fri, 26 Feb 2016 12:30:01 +0100
Subject: [PATCH] Automatic Update
---
ProcessFASTQ.ipynb | 22 ++++++++++++++++++++++
1 file changed, 22 insertions(+)
diff --git a/ProcessFASTQ.ipynb b/ProcessFASTQ.ipynb
index e6c0365..75e41e2 100644
--- a/ProcessFASTQ.ipynb
+++ b/ProcessFASTQ.ipynb
@@ -671,6 +671,28 @@
" "
]
},
+ {
+ "cell_type": "code",
+ "execution_count": 274,
+ "metadata": {
+ "collapsed": false
+ },
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "28\tNM:i:0\n"
+ ]
+ }
+ ],
+ "source": [
+ "%%bash \n",
+ "source ./source\n",
+ "\n",
+ "sed -n 415,420p 4-Bowtied/$FILENAME.sam | hean"
+ ]
+ },
{
"cell_type": "code",
"execution_count": 239,
--
GitLab