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Commit d56fd172 authored by Ivan Pavlovich's avatar Ivan Pavlovich
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Modification of article store script

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.gitignore
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dataSources/PubMed/tmp/* dataSources/PubMed/tmp/*
dataSources/PubMed/data/*
.venv .venv
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dataSources/PubMed/data/save_3_years.json deleted 100644 → 0
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[]
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dataSources/PubMed/pubmedApi.py
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...@@ -85,16 +85,20 @@ def getPubmedData(term, date_min, date_max, nb_items = -1, debug = False, store ...@@ -85,16 +85,20 @@ def getPubmedData(term, date_min, date_max, nb_items = -1, debug = False, store
for part in entrie["MedlineCitation"]["Article"]["Journal"]["Title"]: for part in entrie["MedlineCitation"]["Article"]["Journal"]["Title"]:
if "#text" in part: if "#text" in part:
data["Title"] += part["#text"] data["Title"] += part["#text"]
else: elif isinstance(entrie["MedlineCitation"]["Article"]["Journal"]["Title"], object):
data["Title"] = entrie["MedlineCitation"]["Article"]["Journal"]["Title"] data["Title"] = entrie["MedlineCitation"]["Article"]["Journal"]["Title"]["#text"]
else:
data["Title"] = entrie["MedlineCitation"]["Article"]["Journal"]["Title"]
data["ArticleTitle"] = "" data["ArticleTitle"] = ""
if isinstance(entrie["MedlineCitation"]["Article"]["ArticleTitle"], list): if isinstance(entrie["MedlineCitation"]["Article"]["ArticleTitle"], list):
for part in entrie["MedlineCitation"]["Article"]["ArticleTitle"]: for part in entrie["MedlineCitation"]["Article"]["ArticleTitle"]:
if "#text" in part: if "#text" in part:
data["ArticleTitle"] += part["#text"] data["ArticleTitle"] += part["#text"]
else: elif isinstance(entrie["MedlineCitation"]["Article"]["ArticleTitle"], object):
data["ArticleTitle"] = entrie["MedlineCitation"]["Article"]["ArticleTitle"] data["ArticleTitle"] = entrie["MedlineCitation"]["Article"]["ArticleTitle"]["#text"]
else:
data["ArticleTitle"] = entrie["MedlineCitation"]["Article"]["ArticleTitle"]
data["Abstract"] = "" data["Abstract"] = ""
if "Abstract" in entrie["MedlineCitation"]["Article"] : if "Abstract" in entrie["MedlineCitation"]["Article"] :
...@@ -102,6 +106,8 @@ def getPubmedData(term, date_min, date_max, nb_items = -1, debug = False, store ...@@ -102,6 +106,8 @@ def getPubmedData(term, date_min, date_max, nb_items = -1, debug = False, store
for part in entrie["MedlineCitation"]["Article"]["Abstract"]["AbstractText"]: for part in entrie["MedlineCitation"]["Article"]["Abstract"]["AbstractText"]:
if "#text" in part: if "#text" in part:
data["Abstract"] += part["#text"] data["Abstract"] += part["#text"]
elif isinstance(entrie["MedlineCitation"]["Article"]["Abstract"]["AbstractText"], object):
data["Abstract"] = entrie["MedlineCitation"]["Article"]["Abstract"]["AbstractText"]["#text"]
else: else:
data["Abstract"] = entrie["MedlineCitation"]["Article"]["Abstract"]["AbstractText"] data["Abstract"] = entrie["MedlineCitation"]["Article"]["Abstract"]["AbstractText"]
......
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